Browse Element(s) Details


Os.54771.1.S1_at

Description gb:AK106727.1
DB_XREF= gi:32991936
TID=Os.54771.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H06, full insert sequence.
FL= gb:AK106727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5032011/11Surp module family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50230OsAffx.25106.1.S1_x_at10/111+29187404..29189814hypothetical protein
LOC_Os01g50240OsAffx.23734.1.S1_at11/111+29191368..29193354hypothetical protein
LOC_Os01g50259OsAffx.2289.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50259OsAffx.2290.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50280OsAffx.11541.1.S1_at11/111+29201386..29201893expressed protein
LOC_Os01g50290OsAffx.11542.1.S1_at11/111+29203238..29203955hypothetical protein
LOC_Os01g50300OsAffx.11543.1.S1_at11/111+29204996..29205514hypothetical protein
LOC_Os01g50310Os.37916.1.S1_at11/111+29208316..29209801expressed protein
LOC_Os01g50320Os.17836.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50320Os.54771.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50330OsAffx.11544.1.S1_at11/111+29218040..29219059Strictosidine synthase family protein, expressed
LOC_Os01g50340Os.18108.1.S1_at11/111+29219741..29224118hAT family dimerisation domain containing protein, expressed
LOC_Os01g50350Os.11906.1.S1_at11/111+29237064..29237915expressed protein
LOC_Os01g50360OsAffx.24947.2.S1_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50360OsAffx.24947.2.S1_x_at11/111+29240222..29242749NAC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54771.1.S1_at--972--3691Chr01:29212758..29212782 (25 bp)
CTATCCTCTATCCTGTATTGCAACT
LOC_Os01g50320
Os.54771.1.S1_at--236--2531Chr01:29212779..29212803 (25 bp)
AACTATTCTGCGTATCCATCAGCTG
LOC_Os01g50320
Os.54771.1.S1_at--149--4551Chr01:29212803..29212827 (25 bp)
GCCCTTTCACCTTTAGTTGCAATTG
LOC_Os01g50320
Os.54771.1.S1_at--668--9011Chr01:29212820..29212844 (25 bp)
TGCAATTGGGCGATGCGAGCTCTAA
LOC_Os01g50320
Os.54771.1.S1_at--1102--4591Chr01:29212834..29212858 (25 bp)
GCGAGCTCTAAGAATCCAGTGTTTA
LOC_Os01g50320
Os.54771.1.S1_at--222--5271Chr01:29212845..29212869 (25 bp)
GAATCCAGTGTTTATCATCTTAAGA
LOC_Os01g50320
Os.54771.1.S1_at--11--2231Chr01:29212881..29212905 (25 bp)
AAATTAGACTCTCAACAACACCGCC
LOC_Os01g50320
Os.54771.1.S1_at--720--2471Chr01:29212897..29212921 (25 bp)
AACACCGCCTGATGTATCATGTAGT
LOC_Os01g50320
Os.54771.1.S1_at--1149--10271Chr01:29212957..29212981 (25 bp)
TTTGCTCTCACTGGGATCCACAGAG
LOC_Os01g50320
Os.54771.1.S1_at--238--491Chr01:29213048..29213072 (25 bp)
ATCTGTGTGCAAGAGTTGCCTCTGC
LOC_Os01g50320
Os.54771.1.S1_at--272--6691Chr01:29213062..29213086 (25 bp)
GTTGCCTCTGCAATTGTAAGGACAT
LOC_Os01g50320
Target Sequence 
CTATCCTCTATCCTGTATTGCAACTATTCTGCGTATCCATCAGCTGCCCTTTCACCTTTAGTTGCAATTGGGCGATGCGA
GCTCTAAGAATCCAGTGTTTATCATCTTAAGAGTGCTAGCAAGAAATTAGACTCTCAACAACACCGCCTGATGTATCATG
TAGTAGAGGTTAGAAACCAAACAGTTTTTTCTAGTCCCCTTTGCTCTCACTGGGATCCACAGAGAATAAAAATCTGCTGT
AGGGATCAAACAAGAGTGAAGGACTGAAGGTACCAGACAATATGTTGTTGATCTGTGTGCAAGAGTTGCCTCTGCAATTG
TAAGGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis