Browse Element(s) Details


Os.11906.1.S1_at

Description gb:AU057006
DB_XREF= gi:4715890
DB_XREF=AU057006
CLONE=S21059_2Z
TID=Os.11906.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11906 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0454A11.4 (P0454A11.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5035011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50320Os.17836.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50320Os.54771.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50330OsAffx.11544.1.S1_at11/111+29218040..29219059Strictosidine synthase family protein, expressed
LOC_Os01g50340Os.18108.1.S1_at11/111+29219741..29224118hAT family dimerisation domain containing protein, expressed
LOC_Os01g50350Os.11906.1.S1_at11/111+29237064..29237915expressed protein
LOC_Os01g50360OsAffx.24947.2.S1_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50360OsAffx.24947.2.S1_x_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50370Os.5940.1.S1_at11/111+29248345..29249932Protein kinase domain containing protein, expressed
LOC_Os01g50380OsAffx.21483.1.S1_at4/111+29251268..29251702hypothetical protein
LOC_Os01g50389NANA1+29257921..29258727NA
LOC_Os01g50400Os.27170.1.S1_at11/111+29260692..29262057Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11906.1.S1_at--38--2451Chr01:29237628..29237652 (25 bp)
AAAATCTCCCTGTACTTACCACAGT
LOC_Os01g50350
Os.11906.1.S1_at--498--791Chr01:29237578..29237602 (25 bp)
ATGGTGGACTACTTGGACCTAAACG
LOC_Os01g50350
Os.11906.1.S1_at--908--4931Chr01:29237342..29237366 (25 bp)
GCATTGGGTCCGGTCAAGTGATCAG
LOC_Os01g50350
Os.11906.1.S1_at--27--3231Chr01:29237328..29237352 (25 bp)
CAAGTGATCAGCAAGGCCCATGGCT
LOC_Os01g50350
Os.11906.1.S1_at--963--9091Chr01:29237283..29237307 (25 bp)
TGCTCTGTGCATTAACTGGGCTGAC
LOC_Os01g50350
Os.11906.1.S1_at--262--10671Chr01:29237215..29237239 (25 bp)
TTCCGGCATGTACACCTGAACGAGG
LOC_Os01g50350
Os.11906.1.S1_at--689--9811Chr01:29237181..29237205 (25 bp)
TAACGTGTGTGCACTGTGTACGTGT
LOC_Os01g50350
Os.11906.1.S1_at--960--6651Chr01:29237158..29237182 (25 bp)
GTTGAGATGCATGCACACATACGTG
LOC_Os01g50350
Os.11906.1.S1_at--238--9031Chr01:29237135..29237159 (25 bp)
TGCACGCGCACGGTGATCAACCGAA
LOC_Os01g50350
Os.11906.1.S1_at--962--4511Chr01:29237109..29237133 (25 bp)
GCCCTTTCGCGTTTCATTTTGTACG
LOC_Os01g50350
Os.11906.1.S1_at--470--10811Chr01:29237091..29237115 (25 bp)
TTGTACGCACACAGTGTCACTGCTT
LOC_Os01g50350
Target Sequence 
AAAATCTCCCTGTACTTACCACAGTCACAGTAGAGGAAACCACGCAGGTTATGGTGGACTACTTGGACCTAAACGGAAGC
AGTAGTGACGGTGAGGACGACGAAGCTGCCCAAGGATCGCCGCCGGACGCGGNGTTGCGCCGGCCGGCGNGCANCGCCGC
CGTNCGCCGCANGGGGCGTTNACCCGCCTCAGCATCAGCAGAAGCCGGCGCCCNTGTANGTGGTGGCCCAGCTGGGGTTG
TAGGCGGGCGCAGGCCGTCTGCTCCACCGGCGCCCCNGTGGACGGAGCCCGCCGCATTGGGTCCGGTCAAGTGATCAGCA
AGGCCCATGGCTGCTCGACGTATTCCACCGCCTGCTCTGTGCATTAACTGGGCTGACAGGTCAGACAGGTAGTATGGGAT
ATGTTGAGGTTTGGAAAACCTTCCGGCATGTACACCTGAACGAGGAGTAGATATTAACGTGTGTGCACTGTGTACGTGTT
GAGATGCATGCACACATACGTGCACGCGCACGGTGATCAACCGAACGCCCTTTCGCGTTTCATTTTGTACGCACACAGTG
TCACTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis