Browse Element(s) Details


Os.18108.1.S1_at

Description gb:AK100582.1
DB_XREF= gi:32985791
TID=Os.18108.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105O09, full insert sequence.
FL= gb:AK100582.1 gb:AK058744.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5034011/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50259OsAffx.2289.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50259OsAffx.2290.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50280OsAffx.11541.1.S1_at11/111+29201386..29201893expressed protein
LOC_Os01g50290OsAffx.11542.1.S1_at11/111+29203238..29203955hypothetical protein
LOC_Os01g50300OsAffx.11543.1.S1_at11/111+29204996..29205514hypothetical protein
LOC_Os01g50310Os.37916.1.S1_at11/111+29208316..29209801expressed protein
LOC_Os01g50320Os.17836.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50320Os.54771.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50330OsAffx.11544.1.S1_at11/111+29218040..29219059Strictosidine synthase family protein, expressed
LOC_Os01g50340Os.18108.1.S1_at11/111+29219741..29224118hAT family dimerisation domain containing protein, expressed
LOC_Os01g50350Os.11906.1.S1_at11/111+29237064..29237915expressed protein
LOC_Os01g50360OsAffx.24947.2.S1_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50360OsAffx.24947.2.S1_x_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50370Os.5940.1.S1_at11/111+29248345..29249932Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18108.1.S1_at--551--4271Chr01:29222473..29222497 (25 bp)
CCTGTATCTATCATCCCATTGGACA
LOC_Os01g50340
Os.18108.1.S1_at--390--3611Chr01:29222489..29222513 (25 bp)
CATTGGACAGTGATGCTCGGACATT
LOC_Os01g50340
Os.18108.1.S1_at--748--8891Chr01:29222517..29222541 (25 bp)
TGAGTATCTCAGTACCATGGACCCT
LOC_Os01g50340
Os.18108.1.S1_at--665--9971Chr01:29222529..29222553 (25 bp)
TACCATGGACCCTTCAACAGTGCAG
LOC_Os01g50340
Os.18108.1.S1_at--980--1391Chr01:29223751..29223775 (25 bp)
AGACTTCTGATTGATGGCTCCTGAG
LOC_Os01g50340
Os.18108.1.S1_at--357--6751Chr01:29223824..29223848 (25 bp)
GTTCAACAGTCCAATTTCCAGGCTT
LOC_Os01g50340
Os.18108.1.S1_at--821--1691Chr01:29223857..29223881 (25 bp)
ACCCCTGTAAATGTATCGTTCTAGT
LOC_Os01g50340
Os.18108.1.S1_at--886--651Chr01:29223900..29223924 (25 bp)
ATGAAGTCGTAGGTACCTCCAAGAA
LOC_Os01g50340
Os.18108.1.S1_at--58--8231Chr01:29223940..29223964 (25 bp)
GGCAATTGACTCTGCATTAATGACT
LOC_Os01g50340
Os.18108.1.S1_at--39--4831Chr01:29223981..29224005 (25 bp)
GCTAAGCTAAGTTATCTCCATCGTA
LOC_Os01g50340
Os.18108.1.S1_at--445--6951Chr01:29224003..29224027 (25 bp)
GTAGCTAAGTTATCTCCATCGTATT
LOC_Os01g50340
Target Sequence 
CCTGTATCTATCATCCCATTGGACAGTGATGCTCGGACATTAAATGAGTATCTCAGTACCATGGACCCTTCAACAGTGCA
GGGATTGGTATGTGCGCAAGATTGGTTGCGGGAAGATACAGAAGTTGCTAGTTCAGANGGTCATGCAGATGACAAAGCGG
CACNGTGGTGATGAACTTATCGTGTTACCAAAATAGTTGAGACTTCTGATTGATGGCTCCTGAGTCCTGAGGAGACCAAG
GAGGCGAGGACGCAAGTAACTGCATTATTTATGTTCAACAGTCCAATTTCCAGGCTTCCAGCTACACCCCTGTAAATGTA
TCGTTCTAGTTCTAGATCTGTTTGTACAATGAAGTCGTAGGTACCTCCAAGAAGGTAGTATCAATTTAGGCAATTGACTC
TGCATTAATGACTTAATGTGTATTATGCTGCTAAGCTAAGTTATCTCCATCGTAGCTAAGTTATCTCCATCGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis