Browse Element(s) Details


Os.37916.1.S1_at

Description gb:AK067215.1
DB_XREF= gi:32977233
TID=Os.37916.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-037-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098I22, full insert sequence.
FL= gb:AK104701.1 gb:AK067215.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5031011/11expressed protein
LOC_Os09g167293/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50220OsAffx.27607.1.S1_at3/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.27607.2.S1_s_at2/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.31822.1.S1_at1/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50230OsAffx.25106.1.S1_x_at10/111+29187404..29189814hypothetical protein
LOC_Os01g50240OsAffx.23734.1.S1_at11/111+29191368..29193354hypothetical protein
LOC_Os01g50259OsAffx.2289.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50259OsAffx.2290.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50280OsAffx.11541.1.S1_at11/111+29201386..29201893expressed protein
LOC_Os01g50290OsAffx.11542.1.S1_at11/111+29203238..29203955hypothetical protein
LOC_Os01g50300OsAffx.11543.1.S1_at11/111+29204996..29205514hypothetical protein
LOC_Os01g50310Os.37916.1.S1_at11/111+29208316..29209801expressed protein
LOC_Os01g50320Os.17836.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50320Os.54771.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50330OsAffx.11544.1.S1_at11/111+29218040..29219059Strictosidine synthase family protein, expressed
LOC_Os01g50340Os.18108.1.S1_at11/111+29219741..29224118hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37916.1.S1_at--789--4071Chr01:29208774..29208798 (25 bp)
CGAGAGGGTGGCTGCTCCGACACCT
LOC_Os01g50310
Os.37916.1.S1_at--300--10671Chr01:29208659..29208683 (25 bp)
TTCCTCCGCCTCAAGAGGTAAACTG
LOC_Os01g50310
Os.37916.1.S1_at--84--1031Chr01:29208644..29208668 (25 bp)
AGGTAAACTGGTGATCTGATGCACA
LOC_Os01g50310
Os.37916.1.S1_at--499--6333Chr03:33095715..33095738 (24 bp)
GATGCACAGGAAGTTTTGCTCTGCT
NONE
Os.37916.1.S1_at--551--3831Chr01:29208604..29208628 (25 bp)
CTGCGACAGCCTATGGAAGATTTGA
LOC_Os01g50310
Os.37916.1.S1_at--1078--7731Chr01:29208422..29208446 (25 bp)
GGTGGTGACGCTAAATGTCTGAAAC
LOC_Os01g50310
Os.37916.1.S1_at--227--3852Chr09:10232700..10232723 (24 bp)
CTGAGGAACGCCGAATGGTTGCTGT
LOC_Os09g16729
Os.37916.1.S1_at--643--2971Chr01:29208368..29208392 (25 bp)
AATGGTTGCTGTGCGGTTATGCTTT
LOC_Os01g50310
Os.37916.1.S1_at--313--6791Chr01:29208353..29208377 (25 bp)
GTTATGCTTTTTCTCCATTCTGAGC
LOC_Os01g50310
Os.37916.1.S1_at--580--3851Chr01:29208334..29208358 (25 bp)
CTGAGCTTCTCATTACTTCTTACTG
LOC_Os01g50310
Os.37916.1.S1_at--184--152Chr09:10232635..10232667 (25 bp)
ATTACTTCTTACTGATGGTTTGCAG
LOC_Os09g16729
Target Sequence 
CGAGAGGGTGGCTGCTCCGACACCTGGGACCCTGCAGGGAGCGCGGGTCGCGTGGCCGGTGATGGCTGGAGCTGCGGCCG
TCGGCGCCGCCGCGGCAGCTGTTGCCGTGGTGATCTTCCTCCGCCTCAAGAGGTAAACTGGTGATCTGATGCACAGGAAG
TTTTGCTCTGCTGCGACAGCCTATGGAAGATTTGATGAGTTTTTTTGTGGTGATGAACTGATGATGGTAGAGTGCTGGAT
GAGAATAGTATGACTTCTATGAGCTAGTTGCTTAATAGCCTACAGAAACATAGGGATCTGAACACTTGTTATGTTCCATT
CCTGTTTTTCCTTTTATCATTCTACCTTCTTCGGTGGTGACGCTAAATGTCTGAAACAATTTGTGATGNGTAACTGAGGA
ACGCCGAATGGTTGCTGTGCGGTTATGCTTTTTCTCCATTCTGAGCTTCTCATTACTTCTTACTGATGGTTTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis