Browse Element(s) Details


OsAffx.27607.1.S1_at

Description tigr:9639.m02892
TID=OsAffx.27607.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4386011/11hypothetical protein
LOC_Os06g1325011/11hypothetical protein
LOC_Os02g3724011/11hypothetical protein
LOC_Os11g3179011/11hypothetical protein
LOC_Os01g502203/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43840Os.52793.1.S1_at11/114+25740318..25744423expressed protein
LOC_Os04g43850Os.14919.1.S1_at5/114+25746517..25750579transposon protein, putative, Mutator sub-class
LOC_Os04g43850Os.56216.1.S1_at1/114+25746517..25750579transposon protein, putative, Mutator sub-class
LOC_Os04g43860OsAffx.27607.1.S1_at11/114+25757838..25759963hypothetical protein
LOC_Os04g43860OsAffx.27607.2.S1_s_at11/114+25757838..25759963hypothetical protein
LOC_Os04g43870NANA4+25762405..25767741transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43880OsAffx.14260.1.S1_at10/114+25770908..25774052hypothetical protein
LOC_Os04g43880Os.46459.1.S1_at1/114+25770908..25774052hypothetical protein
LOC_Os04g43890NANA4+25777307..25780642transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43900Os.47463.1.S1_x_at4/114+25783189..25786883transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43900Os.14491.2.S1_x_at4/114+25783189..25786883transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27607.1.S1_at--565--3095Chr11:18156176..18156200 (25 bp)
AATACAATGATGAAGAACCTAATGC
LOC_Os11g31790
OsAffx.27607.1.S1_at--993--53713Chr11:18156187..18156211 (25 bp)
GAAGAACCTAATGCATTTGATTTGT
LOC_Os11g31790
OsAffx.27607.1.S1_at--574--17512Chr11:18156192..18156216 (25 bp)
ACCTAATGCATTTGATTTGTTCAAG
LOC_Os11g31790
OsAffx.27607.1.S1_at--161--9914Chr11:18156215..18156239 (25 bp)
AGGAGTTCCACTACAGCAAGAAAAA
LOC_Os11g31790
OsAffx.27607.1.S1_at--737--80114Chr11:18156216..18156240 (25 bp)
GGAGTTCCACTACAGCAAGAAAAAA
LOC_Os11g31790
OsAffx.27607.1.S1_at--696--3014Chr11:18156242..18156266 (25 bp)
AATGCTACACCCCTGTTGTACAGGA
LOC_Os11g31790
OsAffx.27607.1.S1_at--201--9074Chr11:18156244..18156268 (25 bp)
TGCTACACCCCTGTTGTACAGGAGG
LOC_Os11g31790
OsAffx.27607.1.S1_at--918--9834Chr11:18156247..18156271 (25 bp)
TACACCCCTGTTGTACAGGAGGCTA
LOC_Os11g31790
OsAffx.27607.1.S1_at--878--3354Chr11:18156249..18156273 (25 bp)
CACCCCTGTTGTACAGGAGGCTATT
LOC_Os11g31790
OsAffx.27607.1.S1_at--826--4274Chr11:18156253..18156273 (21 bp)
CCTGTTGTACAGGAGGCTATTACTC
LOC_Os11g31790
OsAffx.27607.1.S1_at--609--8814Chr11:18156255..18156363 (25 bp)
TGTTGTACAGGAGGCTATTACTCGG
LOC_Os11g31790
Target Sequence 
AATACAATGATGAAGAACCTAATGCATTTGATTTGTTCAAGGAGTTCCACTACAGCAAGAAAAAAAAATGCTACACCCCT
GTTGTACAGGAGGCTATTACTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis