Browse Element(s) Details


OsAffx.14260.1.S1_at

Description tigr:9632.m04208
TID=OsAffx.14260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4388010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43850Os.14919.1.S1_at5/114+25746517..25750579transposon protein, putative, Mutator sub-class
LOC_Os04g43850Os.56216.1.S1_at1/114+25746517..25750579transposon protein, putative, Mutator sub-class
LOC_Os04g43860OsAffx.27607.1.S1_at11/114+25757838..25759963hypothetical protein
LOC_Os04g43860OsAffx.27607.2.S1_s_at11/114+25757838..25759963hypothetical protein
LOC_Os04g43870NANA4+25762405..25767741transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43880OsAffx.14260.1.S1_at10/114+25770908..25774052hypothetical protein
LOC_Os04g43880Os.46459.1.S1_at1/114+25770908..25774052hypothetical protein
LOC_Os04g43890NANA4+25777307..25780642transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43900Os.47463.1.S1_x_at4/114+25783189..25786883transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43900Os.14491.2.S1_x_at4/114+25783189..25786883transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43910Os.8374.1.S1_at8/114+25794337..25796955Auxin response factor 16, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14260.1.S1_at--719--4131Chr04:25771690..25771709 (20 bp)
CGCCCGGGAATCGTTATGGTGCTTA
LOC_Os04g43880
OsAffx.14260.1.S1_at--562--10111Chr04:25771699..25771723 (25 bp)
TATGGTGCTTAAATCATCATGGTGG
LOC_Os04g43880
OsAffx.14260.1.S1_at--87--431NONE
ATCATCATGGTGGTTTATTGTTGAT
NONE
OsAffx.14260.1.S1_at--642--411Chr04:25772929..25772953 (25 bp)
ATCATGGATTCAGCAAGAAAGTTCA
LOC_Os04g43880
OsAffx.14260.1.S1_at--931--6291Chr04:25773473..25773497 (25 bp)
GATGATGTTGTGACATTGCCACCTT
LOC_Os04g43880
OsAffx.14260.1.S1_at--517--6291Chr04:25773476..25773500 (25 bp)
GATGTTGTGACATTGCCACCTTCTG
LOC_Os04g43880
OsAffx.14260.1.S1_at--471--3371Chr04:25773492..25773516 (25 bp)
CACCTTCTGGGACATCGCTCATGAA
LOC_Os04g43880
OsAffx.14260.1.S1_at--554--7631Chr04:25773500..25773524 (25 bp)
GGGACATCGCTCATGAAGCTATATA
LOC_Os04g43880
OsAffx.14260.1.S1_at--151--851Chr04:25773524..25773548 (25 bp)
ATGGACTGTCCATTTTATGGTTCAG
LOC_Os04g43880
OsAffx.14260.1.S1_at--527--10351Chr04:25773537..25773970 (25 bp)
TTTATGGTTCAGTTGGTGACAAGCT
LOC_Os04g43880
OsAffx.14260.1.S1_at--312--6631Chr04:25773957..25773981 (25 bp)
GTTGGTGACAAGCTGATAGATCTAT
LOC_Os04g43880
Target Sequence 
CGCCCGGGAATCGTTATGGTGCTTAAATCATCATGGTGGTTTATTGTTGATGAAAAAAATCATGGATTCAGCAAGAAAGT
TCAGAAATTGCAGGAACAAGATATTTTAGATGATGTTGTGACATTGCCACCTTCTGGGACATCGCTCATGAAGCTATATA
TGGACTGTCCATTTTATGGTTCAGTTGGTGACAAGCTGATAGATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis