Browse Element(s) Details


Os.8374.1.S1_at

Description gb:AK100795.1
DB_XREF= gi:32986004
TID=Os.8374.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121F07, full insert sequence.
FL= gb:AK100795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g439108/11Auxin response factor 16, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43880OsAffx.14260.1.S1_at10/114+25770908..25774052hypothetical protein
LOC_Os04g43880Os.46459.1.S1_at1/114+25770908..25774052hypothetical protein
LOC_Os04g43890NANA4+25777307..25780642transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43900Os.47463.1.S1_x_at4/114+25783189..25786883transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43900Os.14491.2.S1_x_at4/114+25783189..25786883transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43910Os.8374.1.S1_at8/114+25794337..25796955Auxin response factor 16, putative, expressed
LOC_Os04g43916Os.22889.1.S1_s_at11/114+25804858..2581542224 kDa vacuolar protein, putative, expressed
LOC_Os04g43922Os.25065.1.S1_a_at11/114+25817747..25822362Exosome complex exonuclease RRP4, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0009733biological_processresponse to auxin stimulus
GO:0010158biological_processabaxial cell fate specification
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0051301biological_processcell division
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8374.1.S1_at--977--1591Chr04:25796523..25796547 (25 bp)
AGCGACTTTTCTGTCATTTGCAGCG
LOC_Os04g43910
Os.8374.1.S1_at--287--10271Chr04:25796539..25796563 (25 bp)
TTTGCAGCGCGTTCGTGAAATCGGC
LOC_Os04g43910
Os.8374.1.S1_at--30--3031Chr04:25796557..25796581 (25 bp)
AATCGGCGCGTAAGCTTAGGATACT
LOC_Os04g43910
Os.8374.1.S1_at--745--8391Chr04:25796646..25796670 (25 bp)
GGCGCTACTCCTAGTCTTTTAGAAG
LOC_Os04g43910
Os.8374.1.S1_at--406--2671Chr04:25796678..25796702 (25 bp)
AAGCCGAGAGCTGCATGCACGTACA
LOC_Os04g43910
Os.8374.1.S1_at--722--3631Chr04:25796725..25796749 (25 bp)
CTTGCTCCAGTCCAGTCTAGAGATT
LOC_Os04g43910
Os.8374.1.S1_at--488--10451Chr04:25796797..25796821 (25 bp)
TTAGTCCTTTTTACAGCTTTCTCGC
LOC_Os04g43910
Os.8374.1.S1_at--895--5271Chr04:25796863..25796887 (25 bp)
GAATGTAGTCTTTGCACCTTGGTCA
LOC_Os04g43910
Os.8374.1.S1_at--782--5591Chr04:25796955..25796979 (25 bp)
GAAATTGAATGCTTCTGCCGCACCA
NONE
Os.8374.1.S1_at--491--3951Chr04:25797041..25797065 (25 bp)
CGGAATATTTACTCGGCGCTGGCAC
NONE
Os.8374.1.S1_at--827--8391Chr04:25797055..25797079 (25 bp)
GGCGCTGGCACTGCTGATTCTGAAT
NONE
Target Sequence 
AGCGACTTTTCTGTCATTTGCAGCGCGTTCGTGAAATCGGCGCGTAAGCTTAGGATACTGACNGATGCTGGCAGTGACAA
CCTGGGAGATTAGAAGAAGTAATAAATCAGCCGAATAACTTAGGGCGCTACTCCTAGTCTTTTAGAAGCAAAAATAAGCC
GAGAGCTGCATGCACGTACAGCTGCATGAGCTGCGGTTTCTCCTTGCTCCAGTCCAGTCTAGAGATTTTTATTCAGGGTA
AAGCTGATGCAGTCTTCAGTTAATTAGGTGTTTTTTAGTCCTTTTTACAGCTTTCTCGCTAGGGGTTTCAGGTAACAACT
ACTAGCGCAAAGTGCAGACAGAATGTAGTCTTTGCACCTTGGTCATCAAATCAAATGTACTGGTACTTCTTTTATTCTCA
TTCGGCGGATATTGAGCCTTAATTTGTTTCACGAAATTGAATGCTTCTGCCGCACCAGACCAAGGTGACAGGATTAGTGC
AGGTGCAGGCTTACCTGTATGCAGTAATTACTATCTGCCGGAATATTTACTCGGCGCTGGCACTGCTGATTCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis