Browse Element(s) Details


Os.22889.1.S1_s_at

Description gb:AK071665.1
DB_XREF= gi:32981688
TID=Os.22889.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023106J16, full insert sequence.
FL= gb:AK071665.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4391611/1124 kDa vacuolar protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43890NANA4+25777307..25780642transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43900Os.47463.1.S1_x_at4/114+25783189..25786883transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43900Os.14491.2.S1_x_at4/114+25783189..25786883transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43910Os.8374.1.S1_at8/114+25794337..25796955Auxin response factor 16, putative, expressed
LOC_Os04g43916Os.22889.1.S1_s_at11/114+25804858..2581542224 kDa vacuolar protein, putative, expressed
LOC_Os04g43922Os.25065.1.S1_a_at11/114+25817747..25822362Exosome complex exonuclease RRP4, putative, expressed
LOC_Os04g43930NANA4+25828722..25829282retrotransposon protein, putative, unclassified
LOC_Os04g43940Os.46862.1.S1_at1/114+25831972..25833398hypothetical protein
LOC_Os04g43940OsAffx.31487.2.S1_at1/114+25831972..25833398hypothetical protein
LOC_Os04g43950OsAffx.22385.1.S1_x_at5/114+25833742..25838154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43950OsAffx.20329.1.S1_at3/114+25833742..25838154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43960NANA4+25838705..25839190transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.22889.1.S1_s_at--120--1651Chr04:25805471..25805495 (25 bp)
AGCGAGATCGATGGGTGGCATACAA
LOC_Os04g43916
Os.22889.1.S1_s_at--660--7531Chr04:25805457..25805481 (25 bp)
GTGGCATACAATCCAGTTTGCTGGT
LOC_Os04g43916
Os.22889.1.S1_s_at--567--4351Chr04:25805445..25805469 (25 bp)
CCAGTTTGCTGGTGGTAAGGACTCA
LOC_Os04g43916
Os.22889.1.S1_s_at--533--3311Chr04:25805408..25805432 (25 bp)
CAGCTAACCCTTTTCTGGGCAAGTA
LOC_Os04g43916
Os.22889.1.S1_s_at--1074--9831Chr04:25805301..25805325 (25 bp)
TACACCGAAGGTTGGCAGGGTTCTC
LOC_Os04g43916
Os.22889.1.S1_s_at--537--2711Chr04:25805273..25805297 (25 bp)
AAGCTTCCAGGATGGTGTGCACCCT
LOC_Os04g43916
Os.22889.1.S1_s_at--898--5171Chr04:25805245..25805269 (25 bp)
GCAAGTCTACTTCTCCTTATACATT
LOC_Os04g43916
Os.22889.1.S1_s_at--120--10191Chr04:25805228..25805252 (25 bp)
TATACATTGGCTTTCTTGACCGCTC
LOC_Os04g43916
Os.22889.1.S1_s_at--1041--5811Chr04:25805211..25805235 (25 bp)
GACCGCTCTTCCTGTCAATATTTAG
LOC_Os04g43916
Os.22889.1.S1_s_at--583--9991Chr04:25805189..25805213 (25 bp)
TAGCCATACTTATTCTTTACCAGAC
LOC_Os04g43916
Os.22889.1.S1_s_at--796--6831Chr04:25804990..25805014 (25 bp)
GTTTCTTACGAACGAGCAGTTTCAT
LOC_Os04g43916
Target Sequence
AGCGAGATCGATGGGTGGCATACAATCCAGTTTGCTGGTGGTAAGGACTCACCAACAAAATTTCAGCTAACCCTTTTCTG
GGCAAGTAATTCCAAGGATGCATTCCCAAAGCAAGTCGAATCAGAAGATCATTCTTTCTTACTAAAACTAAGAACGGATG
TGAATAGAGTTACACCGAAGGTTGGCAGGGTTCTCGAGAAGCTTCCAGGATGGTGTGCACCCTTTGGCAAGTCTACTTCT
CCTTATACATTGGCTTTCTTGACCGCTCTTCCTGTCAATATTTAGCCATACTTATTCTTTACCAGACTTAGGGTATTCGT
AGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATCNCACCNCCACATAGTTTACACTTATAGCCAACAAATGTACA
CGAAAATTGCCAGCAACTTCCGTNTTAACAGAATCATGTGATAGGNGCCNTCAAACATACAGGATAGCCNCGGGTTCAAA
TATGTTTCTTACGAACGAGCAGTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22889.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis