Browse Element(s) Details


OsAffx.27607.2.S1_s_at

Description tigr:9632.m04206
TID=OsAffx.27607.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3179011/11hypothetical protein
LOC_Os02g3724011/11hypothetical protein
LOC_Os06g1325011/11hypothetical protein
LOC_Os04g4386011/11hypothetical protein
LOC_Os01g502202/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31760OsAffx.13097.1.S1_s_at11/1111+18123721..18134096transposon protein, putative, Mutator sub-class
LOC_Os11g31760Os.46613.1.S2_at4/1111+18123721..18134096transposon protein, putative, Mutator sub-class
LOC_Os11g31770OsAffx.31254.1.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.2.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.1.S1_x_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.1.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31780NANA11+18151276..18152838hypothetical protein
LOC_Os11g31790OsAffx.27607.2.S1_s_at11/1111+18154576..18156702hypothetical protein
LOC_Os11g31790OsAffx.27607.1.S1_at11/1111+18154576..18156702hypothetical protein
LOC_Os11g31800OsAffx.31255.1.S1_at11/1111+18159982..18165052hypothetical protein
LOC_Os11g31810NANA11+18168653..18170997hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27607.2.S1_s_at--353--1314Chr11:18155387..18155411 (25 bp)
AGATGATGAAGTCCGCAGTTCGCCA
LOC_Os11g31790
OsAffx.27607.2.S1_s_at--576--2854Chr11:18155395..18155419 (25 bp)
AAGTCCGCAGTTCGCCAACAAAGAT
LOC_Os11g31790
OsAffx.27607.2.S1_s_at--885--3114Chr11:18155435..18155459 (25 bp)
AATATTTTGATCCTTTTCCACTACA
LOC_Os11g31790
OsAffx.27607.2.S1_s_at--781--2414Chr11:18155469..18155493 (25 bp)
AAAAACTTCTCCTGTCAAATTCATG
LOC_Os11g31790
OsAffx.27607.2.S1_s_at--242--5494Chr11:18155500..18155524 (25 bp)
GAACAGTGGACTCAACTCCTAGAAT
LOC_Os11g31790
OsAffx.27607.2.S1_s_at--607--10494Chr11:18155670..18155694 (25 bp)
TTAAGTACCATCACACAACCGGATC
LOC_Os11g31790
OsAffx.27607.2.S1_s_at--973--774Chr11:18156431..18156455 (25 bp)
ATGTGCTTGCTGAGAACACCAAGAA
LOC_Os11g31790
OsAffx.27607.2.S1_s_at--883--7674Chr11:18156478..18156502 (25 bp)
GGGTTCCATAATGCCCAGCCTAGAT
LOC_Os11g31790
OsAffx.27607.2.S1_s_at--764--4555Chr11:18156490..18156514 (25 bp)
GCCCAGCCTAGATTCAGTGAGCAGA
LOC_Os11g31790
OsAffx.27607.2.S1_s_at--127--974Chr11:18156544..18156568 (25 bp)
AGGACCAATGCTGAGCTTCGTGCAC
LOC_Os11g31790
OsAffx.27607.2.S1_s_at--837--1555Chr11:18156557..18156581 (25 bp)
AGCTTCGTGCACAGGTGGCTGATTT
LOC_Os11g31790
Target Sequence 
AGATGATGAAGTCCGCAGTTCGCCAACAAAGATACAGGCTGAAGCAAAAATATTTTGATCCTTTTCCACTACATTTGGTT
ACAAAAACTTCTCCTGTCAAATTCATGAGTAATGAACAGTGGACTCAACTCCTAGAATCATGGAAGAGTCCCCAAAAGAT
GGAGATGTGTCAAAAGAACAAAGAAAACCGAGGGAATGTTAAGTACCATCACACAACCGGATCTCGTGCCTACATGGTTC
ATGTTGAAAATTTGACTCGGATGGAAAACAAGCTATCTACAACAACAGAAGGTGAAGAACTTAAGTCAGCGGCTCAAGTT
GTTGCTGATGTGCTTGCTGAGAACACCAAGAAGAATCGGTTCTTGAAGAATGTGGGGTTCCATAATGCCCAGCCTAGATT
CAGTGAGCAGAGCACTGAGACAGAACTAGAAGCGGAGAAAAGGACCAATGCTGAGCTTCGTGCACAGGTGGCTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27607.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis