Browse Element(s) Details


OsAffx.31255.1.S1_at

Description tigr:9639.m02893
TID=OsAffx.31255.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3180011/11hypothetical protein
LOC_Os12g059401/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31770OsAffx.31254.1.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.2.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.1.S1_x_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.1.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31780NANA11+18151276..18152838hypothetical protein
LOC_Os11g31790OsAffx.27607.2.S1_s_at11/1111+18154576..18156702hypothetical protein
LOC_Os11g31790OsAffx.27607.1.S1_at11/1111+18154576..18156702hypothetical protein
LOC_Os11g31800OsAffx.31255.1.S1_at11/1111+18159982..18165052hypothetical protein
LOC_Os11g31810NANA11+18168653..18170997hypothetical protein
LOC_Os11g31820OsAffx.31256.1.S1_at10/1111+18189218..18200738hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31255.1.S1_at--214--5571Chr11:18160811..18160835 (25 bp)
GAAAGATTTAGCTGCATATTTGGAA
LOC_Os11g31800
OsAffx.31255.1.S1_at--1052--9811Chr11:18160652..18160672 (21 bp)
TAACATATGATGGTATACTCTGGCA
LOC_Os11g31800
OsAffx.31255.1.S1_at--537--6891Chr11:18160640..18160664 (25 bp)
GTATACTCTGGCATCCAGGAGCATG
LOC_Os11g31800
OsAffx.31255.1.S1_at--989--2651Chr11:18160494..18160518 (25 bp)
AAGCGTACACTTGGAATAGCAGCAA
LOC_Os11g31800
OsAffx.31255.1.S1_at--1097--2031Chr11:18160460..18160484 (25 bp)
ACTTTGCAGGCAAGGAACTTCAGGA
LOC_Os11g31800
OsAffx.31255.1.S1_at--1109--9791Chr11:18160432..18160456 (25 bp)
TAACTTGCTAGATTCTTTAGAACAT
LOC_Os11g31800
OsAffx.31255.1.S1_at--981--8091Chr11:18160403..18160427 (25 bp)
GGACCTACATTGTAGCACATCCTGA
LOC_Os11g31800
OsAffx.31255.1.S1_at--757--6952Chr12:2738885..2739091 (25 bp)
GTAGCACATCCTGATATGAGTTATA
LOC_Os12g05940
OsAffx.31255.1.S1_at--629--2471Chr11:18160293..18160392 (25 bp)
AACAGCACGGATGAACAGGATAAAC
LOC_Os11g31800
OsAffx.31255.1.S1_at--666--3211Chr11:18160258..18160282 (25 bp)
CAAGGTCAGATGTGAGAGACTCATA
LOC_Os11g31800
OsAffx.31255.1.S1_at--684--7511Chr11:18160177..18160201 (25 bp)
GTGGATAACTGAATCTCCAGTGCTA
LOC_Os11g31800
Target Sequence 
GAAAGATTTAGCTGCATATTTGGAAGGATCAAAACCAGAAGAAGGACCAGTAACATATGATGGTATACTCTGGCATCCAG
GAGCATGGGAAGCAAATATAAAAACTCAGTTCATTAGAGAAATTTTTTGGCTGATTGATAAAGAACGAGACAAGTTGAAA
ACAAAGAAACTAATAGAAACAGAGAAGGGGAAATCACTGATCAAAATAAAGCGTACACTTGGAATAGCAGCAAGTTTAAA
AAACTTTGCAGGCAAGGAACTTCAGGAAAATAACTTGCTAGATTCTTTAGAACATTTAAGGACCTACATTGTAGCACATC
CTGATATGAGTTATAACAGCACGGATGAACAGGATAAACTTAAATTTGACAAGGTCAGATGTGAGAGACTCATACAAAAA
GTCAAAGGAGACTACATGATAAAATTACGAAAAGAAATTAGGAATTTAGAGTGGATAACTGAATCTCCAGTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis