Browse Element(s) Details


Os.11745.1.S1_at

Description gb:AK102677.1
DB_XREF= gi:32987886
TID=Os.11745.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033102H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102H09, full insert sequence.
FL= gb:AK102677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3177011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31750NANA11+18120155..18120889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g31760OsAffx.13097.1.S1_s_at11/1111+18123721..18134096transposon protein, putative, Mutator sub-class
LOC_Os11g31760Os.46613.1.S2_at4/1111+18123721..18134096transposon protein, putative, Mutator sub-class
LOC_Os11g31770OsAffx.31254.1.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.2.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.1.S1_x_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.1.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31780NANA11+18151276..18152838hypothetical protein
LOC_Os11g31790OsAffx.27607.2.S1_s_at11/1111+18154576..18156702hypothetical protein
LOC_Os11g31790OsAffx.27607.1.S1_at11/1111+18154576..18156702hypothetical protein
LOC_Os11g31800OsAffx.31255.1.S1_at11/1111+18159982..18165052hypothetical protein
LOC_Os11g31810NANA11+18168653..18170997hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009965biological_processleaf morphogenesis
GO:0035281biological_processpre-microRNA export from nucleus
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005635cellular_componentnuclear envelope
GO:0005487molecular_functionnucleocytoplasmic transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11745.1.S1_at--146--6731Chr11:18143380..18143404 (25 bp)
GTTCTCATTAGTTTGTACATTTACA
LOC_Os11g31770
Os.11745.1.S1_at--151--6871Chr11:18143390..18143414 (25 bp)
GTTTGTACATTTACATGTGCTTTTG
LOC_Os11g31770
Os.11745.1.S1_at--92--10491Chr11:18143400..18143424 (25 bp)
TTACATGTGCTTTTGATTTCCAGTC
LOC_Os11g31770
Os.11745.1.S1_at--563--3511Chr11:18143403..18143427 (25 bp)
CATGTGCTTTTGATTTCCAGTCTGT
LOC_Os11g31770
Os.11745.1.S1_at--889--7311Chr11:18143406..18143430 (25 bp)
GTGCTTTTGATTTCCAGTCTGTTTG
LOC_Os11g31770
Os.11745.1.S1_at--585--8832Chr11:18143413..18143437 (25 bp)
TGATTTCCAGTCTGTTTGTAACAAC
LOC_Os11g31770
Os.11745.1.S1_at--1040--6851Chr11:18143426..18143450 (25 bp)
GTTTGTAACAACATTTGTGCTGTCT
LOC_Os11g31770
Os.11745.1.S1_at--957--2451Chr11:18143432..18143456 (25 bp)
AACAACATTTGTGCTGTCTTAAATT
LOC_Os11g31770
Os.11745.1.S1_at--157--7311Chr11:18143442..18143466 (25 bp)
GTGCTGTCTTAAATTAAACTATACA
LOC_Os11g31770
Os.11745.1.S1_at--851--2391Chr11:18143457..18143481 (25 bp)
AAACTATACAATGTGCTTCTCTTTG
LOC_Os11g31770
Os.11745.1.S1_at--802--2031Chr11:18143459..18143483 (25 bp)
ACTATACAATGTGCTTCTCTTTGCC
LOC_Os11g31770
Target Sequence 
GTTCTCATTAGTTTGTACATTTACATGTGCTTTTGATTTCCAGTCTGTTTGTAACAACATTTGTGCTGTCTTAAATTAAA
CTATACAATGTGCTTCTCTTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis