Browse Element(s) Details


Os.46613.1.S2_at

Description gb:AK066937.1
DB_XREF= gi:32976955
TID=Os.46613.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptide transporter (OSJNBa0056G17.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092G19, full insert sequence.
FL= gb:AK121847.1 gb:AK066937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4290011/11POT family protein, expressed
LOC_Os11g317604/11transposon protein, putative, Mutator sub-class
LOC_Os03g283604/11hypothetical protein
LOC_Os10g353504/11transposon protein, putative, Mutator sub-class
LOC_Os07g076004/11hypothetical protein
LOC_Os11g312004/11retrotransposon protein, putative, unclassified
LOC_Os04g412704/11hypothetical protein
LOC_Os08g328004/11transposon protein, putative, Mutator sub-class
LOC_Os02g152404/11hypothetical protein
LOC_Os12g342103/11Transposable element protein, putative, MuDR
LOC_Os11g175202/11hypothetical protein
LOC_Os05g256001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42850Os.46843.2.S1_x_at11/1110+22777812..22778787WRKY DNA binding domain containing protein, expressed
LOC_Os10g42860Os.8501.1.S1_at10/1110+22782311..22784131ribosomal protein L35 containing protein, expressed
LOC_Os10g42870Os.2980.1.S1_at11/1110+22785007..22788050POT family protein, expressed
LOC_Os10g42880OsAffx.7892.1.S1_at11/1110+22788430..22796397retrotransposon protein, putative, unclassified
LOC_Os10g42900Os.46613.1.S2_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_s_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42910OsAffx.13097.1.S1_s_at4/1110+22802600..22812009transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g42920OsAffx.6947.1.S1_at11/1110+22812227..22812651hypothetical protein
LOC_Os10g42930OsAffx.20120.1.S1_at10/1110+22813495..22814824hypothetical protein
LOC_Os10g42930Os.46738.1.S1_s_at1/1110+22813495..22814824hypothetical protein
LOC_Os10g42940Os.4758.1.S1_at10/1110+22816803..22818952ADP-ribosylation factor, putative, expressed
LOC_Os10g42950Os.2989.1.S1_at11/1110+22819042..22823531Protein kinase domain containing protein, expressed
LOC_Os10g42960Os.39043.1.S1_s_at9/1110+22827191..22829895SSS sodium solute transporter superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46613.1.S2_at--289--2511Chr10:22801833..22801857 (25 bp)
AACATCAGCGCCAAGTACGTTGGCG
LOC_Os10g42900
Os.46613.1.S2_at--943--1171Chr10:22801846..22801870 (25 bp)
AGTACGTTGGCGCTGATCTTGGCTA
LOC_Os10g42900
Os.46613.1.S2_at--1097--8451Chr10:22801853..22801877 (25 bp)
TGGCGCTGATCTTGGCTACTTTGAG
LOC_Os10g42900
Os.46613.1.S2_at--316--10651Chr10:22801864..22801888 (25 bp)
TTGGCTACTTTGAGCCCGGCCGAGG
LOC_Os10g42900
Os.46613.1.S2_at--630--4351Chr10:22801894..22801918 (25 bp)
CCAGCCAGTTAGTCCTCTGTTTTTC
LOC_Os10g42900
Os.46613.1.S2_at--1047--3431Chr10:22801899..22801923 (25 bp)
CAGTTAGTCCTCTGTTTTTCCCCAG
LOC_Os10g42900
Os.46613.1.S2_at--683--6851Chr10:22802085..22802109 (25 bp)
GTATTGTTTTGGTTGTAGACGTGGT
LOC_Os10g42900
Os.46613.1.S2_at--636--57336Chr12:20700731..20700755 (25 bp)
GACGTGGTTTGATAATAGTTGGCTA
LOC_Os12g34210
Os.46613.1.S2_at--409--80322Chr12:1202060..1202084 (25 bp)
GGAGGTGGCATATCTTTATCCATTT
NONE
Os.46613.1.S2_at--102--82930Chr12:20700805..20700829 (25 bp)
GGCATATCTTTATCCATTTGGTTGT
LOC_Os12g34210
Os.46613.1.S2_at--692--36731Chr12:20700812..20700966 (25 bp)
CTTTATCCATTTGGTTGTTGTTGAT
LOC_Os12g34210
Target Sequence 
AACATCAGCGCCAAGTACGTTGGCGCTGATCTTGGCTACTTTGAGCCCGGCCGAGGCCGCCCCAGCCAGTTAGTCCTCTG
TTTTTCCCCAGCCGCCCGCCTAGGGTTCGGTCGCCACCGCGTTCTCCTCGCCCAATCTCCCCCAAAAACCTCTCTAATCG
AAGGTGATTTGTGTGGCATTGAGTTTGGGATCGGAAGAGAAGGTAAACCCCTCTATAAACCCTAAGTTCCCCAAAGTTTT
ATTGGATATTTTGTATTGTTTTGGTTGTAGACGTGGTTTGATAATAGTTGGCTAAGGATGGATTATTAGATGGATAATGT
GGGTGGGGATGAAGTGTGGAGGTGGCATATCTTTATCCATTTGGTTGTTGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46613.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis