Browse Element(s) Details


Os.46613.1.S1_s_at

Description gb:AK121847.1
DB_XREF= gi:37991470
TID=Os.46613.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptide transporter (OSJNBa0056G17.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101J24, full insert sequence.
FL= gb:AK121847.1 gb:AK066937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4290011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42850Os.46843.2.S1_x_at11/1110+22777812..22778787WRKY DNA binding domain containing protein, expressed
LOC_Os10g42860Os.8501.1.S1_at10/1110+22782311..22784131ribosomal protein L35 containing protein, expressed
LOC_Os10g42870Os.2980.1.S1_at11/1110+22785007..22788050POT family protein, expressed
LOC_Os10g42880OsAffx.7892.1.S1_at11/1110+22788430..22796397retrotransposon protein, putative, unclassified
LOC_Os10g42900Os.46613.1.S2_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_s_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42910OsAffx.13097.1.S1_s_at4/1110+22802600..22812009transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g42920OsAffx.6947.1.S1_at11/1110+22812227..22812651hypothetical protein
LOC_Os10g42930OsAffx.20120.1.S1_at10/1110+22813495..22814824hypothetical protein
LOC_Os10g42930Os.46738.1.S1_s_at1/1110+22813495..22814824hypothetical protein
LOC_Os10g42940Os.4758.1.S1_at10/1110+22816803..22818952ADP-ribosylation factor, putative, expressed
LOC_Os10g42950Os.2989.1.S1_at11/1110+22819042..22823531Protein kinase domain containing protein, expressed
LOC_Os10g42960Os.39043.1.S1_s_at9/1110+22827191..22829895SSS sodium solute transporter superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46613.1.S1_s_at--57--9371Chr10:22801220..22801244 (25 bp)
TCGACTACTACTTCTGGCTCTGGGC
LOC_Os10g42900
Os.46613.1.S1_s_at--634--3631Chr10:22801367..22801391 (25 bp)
CTTCCTCCACCATTAATTGTTCATC
LOC_Os10g42900
Os.46613.1.S1_s_at--737--131Chr10:22801378..22801402 (25 bp)
ATTAATTGTTCATCCATCATCATCA
LOC_Os10g42900
Os.46613.1.S1_s_at--773--9231Chr10:22801390..22801414 (25 bp)
TCCATCATCATCATAGACATACCAT
LOC_Os10g42900
Os.46613.1.S1_s_at--459--5671Chr10:22801405..22801429 (25 bp)
GACATACCATATATACGCACGCATA
LOC_Os10g42900
Os.46613.1.S1_s_at--830--10192Chr10:22801414..22801438 (25 bp)
TATATACGCACGCATATCTCATCTC
LOC_Os10g42900
Os.46613.1.S1_s_at--1032--1831Chr10:22801423..22801447 (25 bp)
ACGCATATCTCATCTCATCTGTAAG
LOC_Os10g42900
Os.46613.1.S1_s_at--1079--10051Chr10:22801460..22801484 (25 bp)
TAGTCTGCAGCAGTGCATCTTGTAT
LOC_Os10g42900
Os.46613.1.S1_s_at--353--7331Chr10:22801472..22801496 (25 bp)
GTGCATCTTGTATCTTTCTACCTAT
LOC_Os10g42900
Os.46613.1.S1_s_at--1098--8751Chr10:22801480..22801504 (25 bp)
TGTATCTTTCTACCTATAGCCTATA
LOC_Os10g42900
Os.46613.1.S1_s_at--925--8811Chr10:22801514..22801538 (25 bp)
TGAATTTAACATCGGAATCCAGGGA
LOC_Os10g42900
Target Sequence 
TCGACTACTACTTCTGGCTCTGGGCCCTCATCAGCCTCGCCAACCTCGCCCTCTACCTGCTGCTCGCCGCCCGCTACAAG
TCCAAGAAGCCCTCGCCACCGCATTCTTCTTCTCATCCCTAGCCACTACCACTATCATCTCCTTCTTCTTCCTCCACCAT
TAATTGTTCATCCATCATCATCATAGACATACCATATATACGCACGCATATCTCATCTCATCTGTAAGATGGATCATACA
TAGTCTGCAGCAGTGCATCTTGTATCTTTCTACCTATAGCCTATAGTTTGCTTCTGAATTTAACATCGGAATCCAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46613.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis