Browse Element(s) Details


Os.46843.2.S1_x_at

Description gb:NM_197910.1
DB_XREF= gi:37537177
TID=Os.46843.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46843 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative DNA-binding protein (OSJNBa0056G17.18), mRNA.
PROD=putative DNA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4285011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42800OsAffx.30755.2.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_x_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42810OsAffx.30756.1.S1_at11/1110+22757595..22757815hypothetical protein
LOC_Os10g42820Os.2998.1.S1_at11/1110+22758413..22763725early-responsive to dehydration protein, putative, expressed
LOC_Os10g42830Os.3001.1.S1_at11/1110+22765590..22770044Sugar transporter family protein, expressed
LOC_Os10g42840Os.2976.1.S1_at11/1110+22770675..22773572NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed
LOC_Os10g42850Os.46843.2.S1_x_at11/1110+22777812..22778787WRKY DNA binding domain containing protein, expressed
LOC_Os10g42860Os.8501.1.S1_at10/1110+22782311..22784131ribosomal protein L35 containing protein, expressed
LOC_Os10g42870Os.2980.1.S1_at11/1110+22785007..22788050POT family protein, expressed
LOC_Os10g42880OsAffx.7892.1.S1_at11/1110+22788430..22796397retrotransposon protein, putative, unclassified
LOC_Os10g42900Os.46613.1.S2_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_s_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42910OsAffx.13097.1.S1_s_at4/1110+22802600..22812009transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46843.2.S1_x_at--105--4051Chr10:22778113..22778137 (25 bp)
CGATTGAGGAGGACACCACCGGCGA
LOC_Os10g42850
Os.46843.2.S1_x_at--159--4631Chr10:22778140..22778164 (25 bp)
GCGAGGAGTTATTTGCTGGTGCTCA
LOC_Os10g42850
Os.46843.2.S1_x_at--428--4711Chr10:22778154..22778178 (25 bp)
GCTGGTGCTCATTATGTCGTTCCGC
LOC_Os10g42850
Os.46843.2.S1_x_at--53--9051Chr10:22778416..22778440 (25 bp)
TGCAGCAGCTCCAAAGGTTGCTCCG
LOC_Os10g42850
Os.46843.2.S1_x_at--364--2491Chr10:22778578..22778602 (25 bp)
AACATACGCCTCCAAGACAGTACTC
LOC_Os10g42850
Os.46843.2.S1_x_at--57--1411Chr10:22778592..22778616 (25 bp)
AGACAGTACTCCAGTTCATCATCAG
LOC_Os10g42850
Os.46843.2.S1_x_at--758--9651Chr10:22778613..22778637 (25 bp)
TCAGAGTCAGACTGGCCACGATCGT
LOC_Os10g42850
Os.46843.2.S1_x_at--296--10471Chr10:22778639..22778663 (25 bp)
TTACGACCACTCACCTCAAGCAGGA
LOC_Os10g42850
Os.46843.2.S1_x_at--166--3751Chr10:22778653..22778677 (25 bp)
CTCAAGCAGGAGGACGTGATCATCT
LOC_Os10g42850
Os.46843.2.S1_x_at--1003--1711Chr10:22778699..22778723 (25 bp)
ACCACCATCAGCTGTGTACCATTAT
LOC_Os10g42850
Os.46843.2.S1_x_at--695--9971Chr10:22778715..22778739 (25 bp)
TACCATTATTGACACCAAGCACCAC
LOC_Os10g42850
Target Sequence 
CGATTGAGGAGGACACCACCGGCGACGGCGAGGAGTTATTTGCTGGTGCTCATTATGTCGTTCCGCCCATCAAGCGAAGG
AAGAGCCAGACGAAGAAGGTGGTGTGCATCCCGGCGGGGGCGAGTGGCGGCGGCGGCGGCGAGGTGGTGCCGTCGGACCT
GTGGGCGTGGAGGAAGTACGGGCAGAAGCCCATCAAGGGGTCGCCCTACCCTCGCGGGTACTACCGCTGCAGCAGCTCCA
AAGGTTGCTCCGCCCGGAAGCAGGTGGAGCGCAGCCGCGCCGACCCCACAATGCTCGTCGTCACCTACACCTCCGACCAC
AACCATCCATGGCCAACCCACCGCAACGCCCTCGCCGGCTCCACCCGCCCCTCCTCCTCCAACTCATCCAACATACGCCT
CCAAGACAGTACTCCAGTTCATCATCAGAGTCAGACTGGCCACGATCGTCTTACGACCACTCACCTCAAGCAGGAGGACG
TGATCATCTCCCCCTCCCTGCTGCAGCCCGACCACCATCAGCTGTGTACCATTATTGACACCAAGCACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46843.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis