Browse Element(s) Details


OsAffx.30756.1.S1_at

Description tigr:9638.m03927
TID=OsAffx.30756.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4281011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42750Os.46811.1.S1_at11/1110+22732764..22736602cellulose synthase-like protein D4, putative, expressed
LOC_Os10g42754Os.46116.1.S1_x_at11/1110+22736781..22740064expressed protein
LOC_Os10g42754Os.57384.1.S1_at10/1110+22736781..22740064expressed protein
LOC_Os10g42760NANA10+22740066..22741961pentatricopeptide, putative, expressed
LOC_Os10g42770Os.46857.1.S2_at11/1110+22743374..22745588expressed protein
LOC_Os10g42770Os.46857.1.S1_at11/1110+22743374..22745588expressed protein
LOC_Os10g42780Os.38152.1.S1_x_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42780Os.38152.1.S1_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42790Os.19940.1.S1_s_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42790Os.19940.1.S1_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42800OsAffx.30755.2.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_x_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42810OsAffx.30756.1.S1_at11/1110+22757595..22757815hypothetical protein
LOC_Os10g42820Os.2998.1.S1_at11/1110+22758413..22763725early-responsive to dehydration protein, putative, expressed
LOC_Os10g42830Os.3001.1.S1_at11/1110+22765590..22770044Sugar transporter family protein, expressed
LOC_Os10g42840Os.2976.1.S1_at11/1110+22770675..22773572NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed
LOC_Os10g42850Os.46843.2.S1_x_at11/1110+22777812..22778787WRKY DNA binding domain containing protein, expressed
LOC_Os10g42860Os.8501.1.S1_at10/1110+22782311..22784131ribosomal protein L35 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30756.1.S1_at--1104--9651Chr10:22757625..22757649 (25 bp)
TCAGCGGCTGAAGAGTTCGAGGCCA
LOC_Os10g42810
OsAffx.30756.1.S1_at--371--3391Chr10:22757626..22757650 (25 bp)
CAGCGGCTGAAGAGTTCGAGGCCAA
LOC_Os10g42810
OsAffx.30756.1.S1_at--958--4711Chr10:22757631..22757651 (21 bp)
GCTGAAGAGTTCGAGGCCAAGCCTG
LOC_Os10g42810
OsAffx.30756.1.S1_at--679--8991Chr10:22757633..22757719 (25 bp)
TGAAGAGTTCGAGGCCAAGCCTGGC
LOC_Os10g42810
OsAffx.30756.1.S1_at--694--1231Chr10:22757638..22757724 (25 bp)
AGTTCGAGGCCAAGCCTGGCAGGCA
LOC_Os10g42810
OsAffx.30756.1.S1_at--3--2671Chr10:22757712..22757735 (24 bp)
AAGCCTGGCAGGCAGATCACCGAAG
LOC_Os10g42810
OsAffx.30756.1.S1_at--154--1671Chr10:22757712..22757736 (25 bp)
AGCCTGGCAGGCAGATCACCGAAGC
LOC_Os10g42810
OsAffx.30756.1.S1_at--370--1271Chr10:22757724..22757748 (25 bp)
AGATCACCGAAGCCCTCGCGAACAA
LOC_Os10g42810
OsAffx.30756.1.S1_at--536--5411Chr10:22757732..22757756 (25 bp)
GAAGCCCTCGCGAACAAGCTCATCG
LOC_Os10g42810
OsAffx.30756.1.S1_at--601--2671Chr10:22757733..22757757 (25 bp)
AAGCCCTCGCGAACAAGCTCATCGG
LOC_Os10g42810
OsAffx.30756.1.S1_at--591--1971Chr10:22757760..22757784 (25 bp)
ACTGCCCCTCTCACCATTGGCGAAC
LOC_Os10g42810
Target Sequence 
TCAGCGGCTGAAGAGTTCGAGGCCAAGCCTGGCAGGCAGATCACCGAAGCCCTCGCGAACAAGCTCATCGGCCACTGCCC
CTCTCACCATTGGCGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis