Browse Element(s) Details


Os.38152.1.S1_x_at

Description gb:AK065615.1
DB_XREF= gi:32975633
TID=Os.38152.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026B17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026B17, full insert sequence.
FL= gb:AK065615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4278011/11LrgB-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42720Os.25624.1.S1_at11/1110+22715003..22721050Glycerol-3-phosphate acyltransferase, chloroplast precursor, putative, expressed
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein
LOC_Os10g42750Os.46811.1.S1_at11/1110+22732764..22736602cellulose synthase-like protein D4, putative, expressed
LOC_Os10g42754Os.46116.1.S1_x_at11/1110+22736781..22740064expressed protein
LOC_Os10g42754Os.57384.1.S1_at10/1110+22736781..22740064expressed protein
LOC_Os10g42760NANA10+22740066..22741961pentatricopeptide, putative, expressed
LOC_Os10g42770Os.46857.1.S2_at11/1110+22743374..22745588expressed protein
LOC_Os10g42770Os.46857.1.S1_at11/1110+22743374..22745588expressed protein
LOC_Os10g42780Os.38152.1.S1_x_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42780Os.38152.1.S1_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42790Os.19940.1.S1_s_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42790Os.19940.1.S1_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42800OsAffx.30755.2.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_x_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42810OsAffx.30756.1.S1_at11/1110+22757595..22757815hypothetical protein
LOC_Os10g42820Os.2998.1.S1_at11/1110+22758413..22763725early-responsive to dehydration protein, putative, expressed
LOC_Os10g42830Os.3001.1.S1_at11/1110+22765590..22770044Sugar transporter family protein, expressed
LOC_Os10g42840Os.2976.1.S1_at11/1110+22770675..22773572NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38152.1.S1_x_at--326--6791Chr10:22746131..22746155 (25 bp)
GTTAGGCGTGCAATCTGATCCATAC
LOC_Os10g42780
Os.38152.1.S1_x_at--814--6351Chr10:22746115..22746139 (25 bp)
GATCCATACATACATGCAGTGCCCA
LOC_Os10g42780
Os.38152.1.S1_x_at--1147--2911Chr10:22746062..22746086 (25 bp)
AAGGAGCCTGAAGCGTTGCCCTTCT
LOC_Os10g42780
Os.38152.1.S1_x_at--872--7691Chr10:22746013..22746037 (25 bp)
GGGTCGTCGCCTCGTTATTTTGCTC
LOC_Os10g42780
Os.38152.1.S1_x_at--966--10191Chr10:22745998..22746022 (25 bp)
TATTTTGCTCTCTTCCGGCGATCAG
LOC_Os10g42780
Os.38152.1.S1_x_at--1019--10651Chr10:22745986..22746010 (25 bp)
TTCCGGCGATCAGGCACAGCTTAGT
LOC_Os10g42780
Os.38152.1.S1_x_at--109--10451Chr10:22745966..22745990 (25 bp)
TTAGTCTTCATAGCTGGCGATGCCT
LOC_Os10g42780
Os.38152.1.S1_x_at--1123--9171Chr10:22745940..22745964 (25 bp)
TGCCTCACAAACACAACACTTTTCT
LOC_Os10g42780
Os.38152.1.S1_x_at--793--211Chr10:22745893..22745917 (25 bp)
ATTTGTTTGTCTGTCACTATTCATG
LOC_Os10g42780
Os.38152.1.S1_x_at--607--2491Chr10:22745865..22745889 (25 bp)
AACAGACCCAGTACAGATTGATATT
LOC_Os10g42780
Os.38152.1.S1_x_at--549--7371Chr10:22745840..22745864 (25 bp)
GTGATTAATAATCCTACGACCGAAT
LOC_Os10g42780
Target Sequence 
GTTAGGCGTGCAATCTGATCCATACATACATGCAGTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGA
AGCGTTGCCCTTCTGCGCCATCGCCTACGCCCTAACGGGGGTCGTCGCCTCGTTATTTTGCTCTCTTCCGGCGATCAGGC
ACAGCTTAGTCTTCATAGCTGGCGATGCCTCTGCCTCACAAACACAACACTTTTCTTACTAGTATTATTTGGATATATAT
TTGTTTGTCTGTCACTATTCATGAAAAACAGACCCAGTACAGATTGATATTGTGATTAATAATCCTACGACCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38152.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis