Browse Element(s) Details


Os.46857.1.S1_at

Description gb:AK107128.1
DB_XREF= gi:32992337
TID=Os.46857.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0056G17.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C02, full insert sequence.
FL= gb:AK119822.1 gb:AK107128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4277011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42720Os.25624.1.S1_at11/1110+22715003..22721050Glycerol-3-phosphate acyltransferase, chloroplast precursor, putative, expressed
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein
LOC_Os10g42750Os.46811.1.S1_at11/1110+22732764..22736602cellulose synthase-like protein D4, putative, expressed
LOC_Os10g42754Os.46116.1.S1_x_at11/1110+22736781..22740064expressed protein
LOC_Os10g42754Os.57384.1.S1_at10/1110+22736781..22740064expressed protein
LOC_Os10g42760NANA10+22740066..22741961pentatricopeptide, putative, expressed
LOC_Os10g42770Os.46857.1.S2_at11/1110+22743374..22745588expressed protein
LOC_Os10g42770Os.46857.1.S1_at11/1110+22743374..22745588expressed protein
LOC_Os10g42780Os.38152.1.S1_x_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42780Os.38152.1.S1_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42790Os.19940.1.S1_s_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42790Os.19940.1.S1_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42800OsAffx.30755.2.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_x_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42810OsAffx.30756.1.S1_at11/1110+22757595..22757815hypothetical protein
LOC_Os10g42820Os.2998.1.S1_at11/1110+22758413..22763725early-responsive to dehydration protein, putative, expressed
LOC_Os10g42830Os.3001.1.S1_at11/1110+22765590..22770044Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46857.1.S1_at--115--7611Chr10:22744614..22744638 (25 bp)
GGGCACGCCGTGAACCGCTGGATCC
LOC_Os10g42770
Os.46857.1.S1_at--997--4031Chr10:22744580..22744604 (25 bp)
CGCTGGAGTTCCTGTGGTACGACGC
LOC_Os10g42770
Os.46857.1.S1_at--1046--9091Chr10:22744529..22744553 (25 bp)
TGCTCTGGGTCGACCACTTCTGGTG
LOC_Os10g42770
Os.46857.1.S1_at--262--9851Chr10:22744452..22744476 (25 bp)
TACAAGACCCTCAAGTGGGCCGTCG
LOC_Os10g42770
Os.46857.1.S1_at--871--5851Chr10:22744391..22744415 (25 bp)
GAGCCAAGCATGACCACGTCTACCT
LOC_Os10g42770
Os.46857.1.S1_at--135--3871Chr10:22744345..22744369 (25 bp)
CTGATCGATTCATTGCCATTGCCAT
LOC_Os10g42770
Os.46857.1.S1_at--1072--4311Chr10:22744330..22744354 (25 bp)
CCATTGCCATTGTAGGTGGGATCCT
LOC_Os10g42770
Os.46857.1.S1_at--190--8351Chr10:22744298..22744322 (25 bp)
GGCTGTCACTGAGGTGATCAATTTA
LOC_Os10g42770
Os.46857.1.S1_at--798--6991Chr10:22744176..22744200 (25 bp)
GTACGTAACTTCTCTGTGGAATCAT
LOC_Os10g42770
Os.46857.1.S1_at--377--9771Chr10:22744144..22744168 (25 bp)
TAAGGAAAGCCTCGCATCTGCAAAA
LOC_Os10g42770
Os.46857.1.S1_at--777--2731Chr10:22744121..22744145 (25 bp)
AAGAATGCAAATCCCCTTCTCACTC
LOC_Os10g42770
Target Sequence 
GGGCACGCCGTGAACCGCTGGATCCCGGAGGCGGCGCTGGAGTTCCTGTGGTACGACGCGGACAGGGTGCTGCGCCCCCG
CGGCCTGCTCTGGGTCGACCACTTCTGGTGCCGCCGCCCTGACCTCGCCGCCGTCTACCAACCCATGCTGCGCCGCCTCG
GCTACAAGACCCTCAAGTGGGCCGTCGCCGACAAGACCACACCCACGCCCACGGCGCCACCCGGAGCCAAGCATGACCAC
GTCTACCTCACCGCCCTGCTGCAGAAGCCCTGATCGATTCATTGCCATTGCCATTGTAGGTGGGATCCTGGAACAAGGCT
GTCACTGAGGTGATCAATTTAATTGTGCAATAAGCTCAAAGAGGAATGCCAATGCCAAGGCTCAACAATGAGGATGATGC
ACTGATTTGATTTGGGGGTCTTTTTTTTACCAAGGNCTGTACGTAACTTCTCTGTGGAATCATCATTTTATAAGGAAAGC
CTCGCATCTGCAAAAGAATGCAAATCCCCTTCTCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis