Browse Element(s) Details


OsAffx.30755.1.S1_x_at

Description gb:NM_197905.1
DB_XREF= gi:37537167
TID=OsAffx.30755.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative 4-coumarate CoA ligase (OSJNBa0056G17.30), mRNA.
PROD=putative 4-coumarate CoA ligase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4280011/11AMP-binding enzyme family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein
LOC_Os10g42750Os.46811.1.S1_at11/1110+22732764..22736602cellulose synthase-like protein D4, putative, expressed
LOC_Os10g42754Os.46116.1.S1_x_at11/1110+22736781..22740064expressed protein
LOC_Os10g42754Os.57384.1.S1_at10/1110+22736781..22740064expressed protein
LOC_Os10g42760NANA10+22740066..22741961pentatricopeptide, putative, expressed
LOC_Os10g42770Os.46857.1.S2_at11/1110+22743374..22745588expressed protein
LOC_Os10g42770Os.46857.1.S1_at11/1110+22743374..22745588expressed protein
LOC_Os10g42780Os.38152.1.S1_x_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42780Os.38152.1.S1_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42790Os.19940.1.S1_s_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42790Os.19940.1.S1_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42800OsAffx.30755.2.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_x_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42810OsAffx.30756.1.S1_at11/1110+22757595..22757815hypothetical protein
LOC_Os10g42820Os.2998.1.S1_at11/1110+22758413..22763725early-responsive to dehydration protein, putative, expressed
LOC_Os10g42830Os.3001.1.S1_at11/1110+22765590..22770044Sugar transporter family protein, expressed
LOC_Os10g42840Os.2976.1.S1_at11/1110+22770675..22773572NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed
LOC_Os10g42850Os.46843.2.S1_x_at11/1110+22777812..22778787WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009698biological_processphenylpropanoid metabolism
GO:0005777cellular_componentperoxisome
GO:0004321molecular_functionfatty-acyl-CoA synthase activity
GO:0016207molecular_function4-coumarate-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30755.1.S1_x_at--669--10131Chr10:22755495..22755519 (25 bp)
TATGCCTCAGTAGGTCTTTTAGCCC
LOC_Os10g42800
OsAffx.30755.1.S1_x_at--368--8151Chr10:22755442..22755466 (25 bp)
GGAAAGTGGTTCTTGTCTGCCTCCA
LOC_Os10g42800
OsAffx.30755.1.S1_x_at--593--5211Chr10:22754720..22754744 (25 bp)
GAATTTTGCTTCGTCACAGGTTACT
LOC_Os10g42800
OsAffx.30755.1.S1_x_at--33--7951Chr10:22754443..22754463 (21 bp)
GGATTTCAGATAGCTCCAGCTGACT
LOC_Os10g42800
OsAffx.30755.1.S1_x_at--1--2071Chr10:22754421..22754445 (25 bp)
ACTTGGAAGCTGTTCTGATCCGGCA
LOC_Os10g42800
OsAffx.30755.1.S1_x_at--522--6351Chr10:22754405..22754429 (25 bp)
GATCCGGCACCCTGAAATTATTGAT
LOC_Os10g42800
OsAffx.30755.1.S1_x_at--101--5391Chr10:22754186..22754210 (25 bp)
GAAGCACTCTTTCTTGTACGCATGT
LOC_Os10g42800
OsAffx.30755.1.S1_x_at--460--7071Chr10:22753610..22753634 (25 bp)
GTAATATTCGTGGAGGCGATACCTA
LOC_Os10g42800
OsAffx.30755.1.S1_x_at--294--4631Chr10:22753595..22753619 (25 bp)
GCGATACCTAAGTCAGCTGCTGGCA
LOC_Os10g42800
OsAffx.30755.1.S1_x_at--709--3911Chr10:22753576..22753600 (25 bp)
CTGGCAAGGTTCTGAGGAGGCTTCT
LOC_Os10g42800
OsAffx.30755.1.S1_x_at--748--6171Chr10:22753563..22753587 (25 bp)
GAGGAGGCTTCTCAAGGACTCTCTT
LOC_Os10g42800
Target Sequence 
TATGCCTCAGTAGGTCTTTTAGCCCCCAACATGCATGCTAAAATTGTTCATCTGGAAAGTGGTTCTTGTCTGCCTCCAGG
CTCTTATGGGGAGTTATGGCTCCATGGCCCGGCTATAATGAAAGAATTTTGCTTCGTCACAGGTTACTTGAATGATGATG
ATGATGCTTTCACTAGAAAGGATGGCTGGTTGAGGACTGGTGATATTGCTTACTTTGATTCAGATGGGTATTTGTTCATA
GTGGGTCGCTTGAAAGACACAATCAAGTACAAAGGATTTCAGATAGCTCCAGCTGACTTGGAAGCTGTTCTGATCCGGCA
CCCTGAAATTATTGATGTTGCTGTGACATCTGATGAAGATGAAGAAGCTGGAGAGATACCTGTAGCTTTTGTGGTGAGAA
AATCTGGAAGCACTCTTTCTTGTACGCATGTCATGGAGTATGTGGCCAAGCAGGTGGCGTCGTATAAGAGAGTGAGGAAG
GTAATATTCGTGGAGGCGATACCTAAGTCAGCTGCTGGCAAGGTTCTGAGGAGGCTTCTCAAGGACTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30755.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis