Browse Element(s) Details


Os.9977.1.S1_x_at

Description gb:AK067871.1
DB_XREF= gi:32977889
TID=Os.9977.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hepatocyte growth factor-regulated tyrosine kinase substrate-like protein (OSJNBa0035H01.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126G20, full insert sequence.
FL= gb:AK067871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4273010/11VHS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42690Os.7130.1.S1_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42690Os.7130.2.S1_x_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42700Os.15736.1.S1_at11/1110+22702516..22705386expressed protein
LOC_Os10g42710Os.11985.1.S1_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.1.S1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.2.A1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42720Os.25624.1.S1_at11/1110+22715003..22721050Glycerol-3-phosphate acyltransferase, chloroplast precursor, putative, expressed
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein
LOC_Os10g42750Os.46811.1.S1_at11/1110+22732764..22736602cellulose synthase-like protein D4, putative, expressed
LOC_Os10g42754Os.46116.1.S1_x_at11/1110+22736781..22740064expressed protein
LOC_Os10g42754Os.57384.1.S1_at10/1110+22736781..22740064expressed protein
LOC_Os10g42760NANA10+22740066..22741961pentatricopeptide, putative, expressed
LOC_Os10g42770Os.46857.1.S2_at11/1110+22743374..22745588expressed protein
LOC_Os10g42770Os.46857.1.S1_at11/1110+22743374..22745588expressed protein
LOC_Os10g42780Os.38152.1.S1_x_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42780Os.38152.1.S1_at11/1110+22745679..22749384LrgB-like family protein, expressed
LOC_Os10g42790Os.19940.1.S1_s_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42790Os.19940.1.S1_at11/1110+22749779..22752607Cytidylyltransferase family protein, expressed
LOC_Os10g42800OsAffx.30755.2.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_at11/1110+22753530..22756895AMP-binding enzyme family protein
LOC_Os10g42800OsAffx.30755.1.S1_x_at11/1110+22753530..22756895AMP-binding enzyme family protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0005795cellular_componentGolgi stack
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9977.1.S1_x_at--341--3151Chr10:22724132..22724156 (25 bp)
AATTCGCTTTCCTGGGCGTGATGAT
LOC_Os10g42730
Os.9977.1.S1_x_at--961--6711Chr10:22724881..22724905 (25 bp)
GTTCTGGTGCTGATGAGTTGCTTCA
LOC_Os10g42730
Os.9977.1.S1_x_at--1131--6051Chr10:22724895..22724919 (25 bp)
GAGTTGCTTCAGGATCTTGACGACA
LOC_Os10g42730
Os.9977.1.S1_x_at--739--6531Chr10:22724979..22725003 (25 bp)
GATTTCATCAGTTTCTGACCACCAG
LOC_Os10g42730
Os.9977.1.S1_x_at--770--1271Chr10:22725002..22725026 (25 bp)
AGATCCAGATACAGCAGGGCCGCAG
LOC_Os10g42730
Os.9977.1.S1_x_at--504--1091Chr10:22725017..22725041 (25 bp)
AGGGCCGCAGGGAGACACTTGATAT
LOC_Os10g42730
Os.9977.1.S1_x_at--398--7471Chr10:22725048..22725072 (25 bp)
GTGTGATATGCCCATCTTGCTTGAA
LOC_Os10g42730
Os.9977.1.S1_x_at--560--3631NONE
CTTGCTTGAATGCATCCCAGGGATT
NONE
Os.9977.1.S1_x_at--107--691Chr10:22725111..22725135 (25 bp)
ATGACTAGTTTCTTGCTGTACAGGA
LOC_Os10g42730
Os.9977.1.S1_x_at--193--6551Chr10:22725179..22725203 (25 bp)
GATTTTGGCTCATGACTACTATCAG
LOC_Os10g42730
Os.9977.1.S1_x_at--87--151Chr10:22725217..22725241 (25 bp)
ATTACTTGCTGTACGCTCGGTGAAG
LOC_Os10g42730
Target Sequence 
AATTCGCTTTCCTGGGCGTGATGATGAGAGAACTCCCCCCGCACTAAAGATGGCACTGTAGGGAAGCGAGCAGGTTCTGG
TGCTGATGAGTTGCTTCAGGATCTTGACGACATGATATTTGGCAAGAAGGGCGGCACCTCATCTCAGCAGGACAGGAAGG
AACAAAAGGACGATTTCATCAGTTTCTGACCACCAGATCCAGATACAGCAGGGCCGCAGGGAGACACTTGATATGGATTT
GTGTGATATGCCCATCTTGCTTGAATGCATCCCAGGGATTTTGTTTGGTTTAATGTCTTGGGCATGACTAGTTTCTTGCT
GTACAGGAATAGATAGATGTAGCAGTCCCCCTTACTGTGTCAAGCCAGTCAGATTTTGGCTCATGACTACTATCAGTGTC
AGAGGTTTCATTACTTGCTGTACGCTCGGTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9977.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis