Browse Element(s) Details


Os.15736.1.S1_at

Description gb:AK100237.1
DB_XREF= gi:32985446
TID=Os.15736.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052F21, full insert sequence.
FL= gb:AK061718.1 gb:AK100237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4270011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42660Os.12915.1.S1_at11/1110+22675857..22677978expressed protein
LOC_Os10g42670Os.13874.1.S1_x_at11/1110+22678957..22682117xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os10g42690Os.7130.1.S1_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42690Os.7130.2.S1_x_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42700Os.15736.1.S1_at11/1110+22702516..22705386expressed protein
LOC_Os10g42710Os.11985.1.S1_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.1.S1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.2.A1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42720Os.25624.1.S1_at11/1110+22715003..22721050Glycerol-3-phosphate acyltransferase, chloroplast precursor, putative, expressed
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15736.1.S1_at--222--8811Chr10:22704662..22704686 (25 bp)
TGTTGCGTACGCGAAAGCTGATGTA
LOC_Os10g42700
Os.15736.1.S1_at--921--7951Chr10:22704707..22704731 (25 bp)
GGATCCGGAGTACACACGAGCTGTT
LOC_Os10g42700
Os.15736.1.S1_at--137--4451Chr10:22704742..22704766 (25 bp)
GCCTTGTGGCCTTGAAGCAGCTAAC
LOC_Os10g42700
Os.15736.1.S1_at--1060--6531Chr10:22705049..22705073 (25 bp)
GATTTTCATACTCAGTACTCACTAG
LOC_Os10g42700
Os.15736.1.S1_at--456--9491Chr10:22705133..22705157 (25 bp)
TCTCTGGAGGCGCTTCAGTTCCATG
LOC_Os10g42700
Os.15736.1.S1_at--435--4891Chr10:22705191..22705215 (25 bp)
GCTTTAGCTGTGTCATGGCATCTTT
LOC_Os10g42700
Os.15736.1.S1_at--65--8511Chr10:22705206..22705230 (25 bp)
TGGCATCTTTTCTTTGCAGCCAGCT
LOC_Os10g42700
Os.15736.1.S1_at--605--4411Chr10:22705224..22705248 (25 bp)
GCCAGCTACTACACGAGATTCTTAC
LOC_Os10g42700
Os.15736.1.S1_at--357--6851Chr10:22705278..22705302 (25 bp)
GTTTGAAACTTTCGTGCCACTATTT
LOC_Os10g42700
Os.15736.1.S1_at--845--1611Chr10:22705307..22705331 (25 bp)
AGCTGTGCCAAAACTGCCAGATCTC
LOC_Os10g42700
Os.15736.1.S1_at--511--2371Chr10:22705354..22705378 (25 bp)
AAACCTTGCTTCAGCTATGCATGGT
LOC_Os10g42700
Target Sequence 
TGTTGCGTACGCGAAAGCTGATGTAGTAGTGAAGCTTGGTGGATGGGATCCGGAGTACACACGAGCTGTTGCCCAGGGTT
GCCTTGTGGCCTTGAAGCAGCTAACATTGGCAGACAAGAAGCTAGCAGGTAAGAAGAGCCTATACATGAGGCTGGGATGC
CGAGGGGATTGGCCCAACATCGAGCCTCCCGGCTGGGATCCTGACTCCGACGCACCACCCACCAACATATGATTTTCATA
CTCAGTACTCACTAGTAGTAGTATATATACAGTACATGATTCTCATTCTAGCCTNTTNGTCGTCGCTTTTCTTCTCTCTG
GAGGCGCTTCAGTTCCATGGAATCCACATTCACGGGGCATTTCCCAGATTCAGCTTTAGCTGTGTCATGGCATCTTTTCT
TTGCAGCCAGCTACTACACGAGATTCTTACTGCTAGTAAAATACTCTTGTGTTACTACAGTTTGAAACTTTCGTGCCACT
ATTTTTTAAGCTGTGCCAAAACTGCCAGATCTCATGGCAAATATAAACCATAACAAAACCTTGCTTCAGCTATGCATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis