Browse Element(s) Details


Os.11985.1.S1_at

Description gb:AK121290.1
DB_XREF= gi:37990913
TID=Os.11985.1
CNT=44
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11985 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CEO protein (OSJNBa0035H01.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109E12, full insert sequence.
FL= gb:AK072769.1 gb:AK121290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4271011/11Poly polymerase catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42670Os.13874.1.S1_x_at11/1110+22678957..22682117xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os10g42690Os.7130.1.S1_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42690Os.7130.2.S1_x_at11/1110+22696125..22702067transcription factor jumonji, putative, expressed
LOC_Os10g42700Os.15736.1.S1_at11/1110+22702516..22705386expressed protein
LOC_Os10g42710Os.11985.1.S1_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.1.S1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42710Os.11985.2.A1_a_at11/1110+22705656..22710023Poly polymerase catalytic domain containing protein, expressed
LOC_Os10g42720Os.25624.1.S1_at11/1110+22715003..22721050Glycerol-3-phosphate acyltransferase, chloroplast precursor, putative, expressed
LOC_Os10g42730Os.5962.1.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.2.S1_at11/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.9977.1.S1_x_at10/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42730Os.51613.1.S1_x_at5/1110+22722457..22731085VHS domain-containing protein, putative, expressed
LOC_Os10g42740Os.53927.1.S2_at2/1110+22724786..22731082expressed protein
LOC_Os10g42740OsAffx.15875.1.S1_at2/1110+22724786..22731082expressed protein
LOC_Os10g42750Os.46811.1.S1_at11/1110+22732764..22736602cellulose synthase-like protein D4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000303biological_processresponse to superoxide
GO:0006979biological_processresponse to oxidative stress
GO:0009723biological_processresponse to ethylene stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0010193biological_processresponse to ozone
GO:0012501biological_processprogrammed cell death
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11985.1.S1_at--101--2091Chr10:22708250..22708274 (25 bp)
ACATAATTGTCGAGCCCAATGGGAC
LOC_Os10g42710
Os.11985.1.S1_at--727--5431Chr10:22708216..22708240 (25 bp)
GAACGACCACTTTGGAACATCAGAA
LOC_Os10g42710
Os.11985.1.S1_at--203--1511Chr10:22708161..22708185 (25 bp)
AGCACTGATGATGTTTCCAGCCCTA
LOC_Os10g42710
Os.11985.1.S1_at--912--8771Chr10:22708150..22708174 (25 bp)
TGTTTCCAGCCCTAAGAGAGCCAAG
LOC_Os10g42710
Os.11985.1.S1_at--670--6011Chr10:22708073..22708097 (25 bp)
GAGAGAATGAGCCACACGCCTTGCT
LOC_Os10g42710
Os.11985.1.S1_at--1100--7751Chr10:22708011..22708035 (25 bp)
GGTGACCATTCACGTGTTCAACTAG
LOC_Os10g42710
Os.11985.1.S1_at--256--3271Chr10:22707993..22708017 (25 bp)
CAACTAGCTATTTCTGCTGTTCAGA
LOC_Os10g42710
Os.11985.1.S1_at--73--7191Chr10:22707953..22707977 (25 bp)
GTCTGGGCACTGTTCTTGGTTCCAA
LOC_Os10g42710
Os.11985.1.S1_at--833--8131Chr10:22707928..22707952 (25 bp)
GGACATCGTTGGGATCTACAGAACA
LOC_Os10g42710
Os.11985.1.S1_at--167--5191Chr10:22707827..22707851 (25 bp)
GCAATGCAAATGTCCGCTATGCCTG
LOC_Os10g42710
Os.11985.1.S1_at--731--4871Chr10:22707812..22707836 (25 bp)
GCTATGCCTGGCTTGCTTGCTCAAA
LOC_Os10g42710
Target Sequence 
ACATAATTGTCGAGCCCAATGGGACACAAGAAATGAACGACCACTTTGGAACATCAGAAAGTTCAGCAGAAAGCTCGAAT
TTTGAATNTAGCACTGATGATGTTTCCAGCCCTAAGAGAGCCAAGGCTGAGAGGAGTGTCGCAGGAAACAAAACTGGTGG
TGTCAAAGAAACTATTGGAGAGAATGAGCCACACGCCTTGCTGCCTATTCCCTGCAGATCTCTACCACAAGATAAGCTGG
GTGACCATTCACGTGTTCAACTAGCTATTTCTGCTGTTCAGAAATTGTTGCTGCANGGTCTGGGCACTGTTCTTGGTTCC
AAGGACATCGTTGGGATCTACAGAACACCAGCAGTAGATAACCATAAAGAATTTCGTTATAATCTTTTCAAAAAGCAGGC
AGAGCATACTAAATGTAAGCGTGGCAATGCAAATGTCCGCTATGCCTGGCTTGCTTGCTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis