Browse Element(s) Details


Os.53927.1.S2_at

Description gb:AK100868.1
DB_XREF= gi:32986077
TID=Os.53927.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023124F24, full insert sequence.
FL= gb:AK100868.1 gb:AK108360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g367408/11expressed protein
LOC_Os10g427402/11expressed protein
LOC_Os04g229502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36710Os.49399.1.S1_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.2.S1_a_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.4.S1_x_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.3.S1_x_at8/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36720OsAffx.21244.1.S1_at10/111+20713042..20715241Major Facilitator Superfamily protein
LOC_Os01g36730NANA1+20717930..20721104hypothetical protein
LOC_Os01g36740Os.53927.1.S2_at8/111+20734485..20736516expressed protein
LOC_Os01g36750NANA1+20738483..20739103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36760OsAffx.11356.1.S1_at11/111+20741163..20743109hypothetical protein
LOC_Os01g36760OsAffx.11356.1.S1_s_at11/111+20741163..20743109hypothetical protein
LOC_Os01g36760Os.53927.1.S1_at7/111+20741163..20743109hypothetical protein
LOC_Os01g36766Os.14491.2.S1_x_at1/111+20751517..20754472transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36772NANA1+20754593..20756446transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36780NANA1+20757851..20761182transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53927.1.S2_at--650--31Chr01:20735092..20735116 (25 bp)
ATTGGTACCAGGCAGTCATACACGC
LOC_Os01g36740
Os.53927.1.S2_at--1079--2592Chr10:22726784..22726808 (25 bp)
AACGCCGCATCATCCAAGTGCTTGA
LOC_Os10g42740
Os.53927.1.S2_at--584--2851Chr01:20735050..20735074 (25 bp)
AAGTGCTTGACTCCGTGGCGAATTC
LOC_Os01g36740
Os.53927.1.S2_at--805--8373Chr10:22726758..22726777 (20 bp)
GGCGAATTCATCCACACAACACAAG
LOC_Os10g42740
Os.53927.1.S2_at--601--291Chr01:20734869..20734893 (25 bp)
ATACCAACTCAATGGCCTGACCAAA
LOC_Os01g36740
Os.53927.1.S2_at--276--3632Chr04:13002935..13002959 (25 bp)
CTTCCTGGGAAGTCACGGTCGTACA
LOC_Os04g22950
Os.53927.1.S2_at--186--9591Chr01:20734706..20734727 (22 bp)
TCTTGTCTCATGTGGGCTGTTTGTA
LOC_Os01g36740
Os.53927.1.S2_at--1113--2391Chr01:20734676..20734700 (25 bp)
AAACATGGAGCACTGTCAAGGCAAT
LOC_Os01g36740
Os.53927.1.S2_at--703--8191Chr01:20734471..20734495 (25 bp)
GGAAGATCTAATACATGCTACACCT
NONE
Os.53927.1.S2_at--149--1751Chr01:20734450..20734474 (25 bp)
ACCTCCCAACATACTGTCCGAAATA
NONE
Os.53927.1.S2_at--963--3171Chr01:20734321..20734345 (25 bp)
AATTGTGTGTGTACCATTTTGTGCA
NONE
Target Sequence 
ATTGGTACCAGGCAGTCATACACGCCAAACGCCGCATCATCCAAGTGCTTGACTCCGTGGCGAATTCATCCACACAACAC
AAGGAACTAAGAAAAGTTAAGGAGTAGAGCAATATTTTCAGATGTTGGAACCAGATGAAAAGCACATACCAACTCAATGG
CCTGACCAAAAAATTACTTCCTGGGAAGTCACGGTCGTACAGAATTTGCCATTACAAGGAGATCTTGTCTCATGTGGGCT
GTTTGTATTAAAAAACATGGAGCACTGTCAAGGCAATAGGTTGTCGAAGGAATACACGCATGAAGATATAAAAAATTTTA
GAAGGAAGTTAGCTGCAATCTTGGGGGACGCTCGCAAGAAGAACGATAAAAGGAAGATCTAATACATGCTACACCTCCCA
ACATACTGTCCGAAATAAATGTCTTTGTTCTAATTCCTTTAATATAAGGAGTTAGTATTACTGAAAAAATGGATTGTTCC
TTTATTATTTTGGCAAGTGTTTTCAATAGTTTGCTCAGAACAATTGTGTGTGTACCATTTTGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53927.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis