Browse Element(s) Details


Os.11575.4.S1_x_at

Description gb:NM_193360.1
DB_XREF= gi:34913803
GEN=OSJNBa0026J14.30
TID=Os.11575.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0026J14.30 (OSJNBa0026J14.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0026J14.30 (OSJNBa0026J14.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3274011/11transposon protein, putative, Pong sub-class
LOC_Os03g4644011/11BTB/POZ domain containing protein, expressed
LOC_Os07g1075011/11transposon protein, putative, Pong sub-class
LOC_Os01g3671011/11transposon protein, putative, Pong sub-class
LOC_Os08g4048011/11transposon protein, putative, Pong sub-class, expressed
LOC_Os09g0851011/11transposon protein, putative, Pong sub-class
LOC_Os01g0850011/11transposon protein, putative, Pong sub-class
LOC_Os09g146505/11transposon protein, putative, Pong sub-class
LOC_Os02g265004/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32700NANA5+19065512..19069967retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g32710Os.25202.1.S1_at10/115+19071827..19074457isoamylase-type starch debranching enzyme ISO2, putative, expressed
LOC_Os05g32720Os.52751.1.S1_at11/115+19076997..19082958early-responsive to dehydration protein, putative, expressed
LOC_Os05g32730OsAffx.27123.1.S1_at11/115+19083431..19085092Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os05g32740Os.11575.4.S1_x_at11/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32740Os.11575.2.S1_a_at10/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32740Os.11575.3.S1_x_at8/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32750OsAffx.20858.1.S1_x_at10/115+19092111..19092868hypothetical protein
LOC_Os05g32750OsAffx.20858.4.S1_x_at9/115+19092111..19092868hypothetical protein
LOC_Os05g32760OsAffx.14927.1.S1_at11/115+19095361..19100596bZIP protein, putative, expressed
LOC_Os05g32760Os.47700.1.A1_at11/115+19095361..19100596bZIP protein, putative, expressed
LOC_Os05g32770OsAffx.27124.1.S1_at7/115+19111120..19113929hypothetical protein
LOC_Os05g32770OsAffx.24473.1.S1_at6/115+19111120..19113929hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009408biological_processresponse to heat
GO:0009617biological_processresponse to bacteria
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009621biological_processresponse to pathogenic fungi
GO:0009625biological_processresponse to insect
GO:0009627biological_processsystemic acquired resistance
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009954biological_processproximal/distal pattern formation
GO:0010227biological_processfloral organ abscission
GO:0048439biological_processflower morphogenesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11575.4.S1_x_at--623--2918Chr07:5834297..5834321 (25 bp)
AAGGATCTCTGGATTTGGCACGCTT
LOC_Os07g10750
Os.11575.4.S1_x_at--817--7819Chr09:8684401..8684423 (23 bp)
GGTATGCCTGGGTCTCATAACGATA
LOC_Os09g14650
Os.11575.4.S1_x_at--377--4059Chr07:5834366..5834390 (25 bp)
CGATCCCCGCTATTTGCAAAGCTAG
LOC_Os07g10750
Os.11575.4.S1_x_at--351--82310Chr09:8684468..8684492 (25 bp)
GGCAAGGCTCCTGAAGTGAACTATA
LOC_Os09g14650
Os.11575.4.S1_x_at--873--49510Chr09:8684538..8684562 (25 bp)
GCATATATCCTTCTTGGGCCACATT
LOC_Os09g14650
Os.11575.4.S1_x_at--906--4399Chr09:8684555..8684579 (25 bp)
GCCACATTTGTGAAGACCATACCAG
LOC_Os09g14650
Os.11575.4.S1_x_at--638--7898Chr07:5834584..5834608 (25 bp)
GGTTCTGCAAGCTCGATTTGCCATT
LOC_Os07g10750
Os.11575.4.S1_x_at--1109--199Chr09:8684673..8684696 (24 bp)
ATTTGCCATTGTTCGAGGGCCAGCT
LOC_Os09g14650
Os.11575.4.S1_x_at--253--1438Chr09:8684809..8684833 (25 bp)
AGAAAATGTCAGAGTGTCCCACGAT
NONE
Os.11575.4.S1_x_at--842--6118Chr07:5834751..5834775 (25 bp)
GAGTGTCCCACGATGAAATACCTGA
LOC_Os07g10750
Os.11575.4.S1_x_at--673--8117Chr07:5834812..5834836 (25 bp)
GGACGACGAAACTCACTATCAGCTA
LOC_Os07g10750
Target Sequence 
AAGGATCTCTGGATTTGGCACGCTTTTTTTGGTATGCCTGGGTCTCATAACGATATCAATGTACTTCATCGATCCCCGCT
ATTTGCAAAGCTAGCTGAAGGCAAGGCTCCTGAAGTGAACTATAGTATAAATGGACACGATTATATGATGGGATATTATC
TTGCTGATGGCATATATCCTTCTTGGGCCACATTTGTGAAGACCATACCAGAACCACATGGCAACAAGAGGAAATATTTT
GCCAAAGCACAGGAAGCAGTAAGGAAGGATGTCGAACGAGCTTTTGGGGTTCTGCAAGCTCGATTTGCCATTGTTCGAGG
GCCAGCTCGACATTGGGATGAAAAGACTCTGGGATACATCATGAAAGCTTGTGTTATCATGCATAACATGATTATTGAAG
ATGAGGGAGAAGTTGATTGGGAAGAACGGTTCCCAGAGGGAGGAGAAAATGTCAGAGTGTCCCACGATGAAATACCTGAT
CTTGATGATTTTATCCAGATGCACAAAAAAATAAGGGACGACGAAACTCACTATCAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11575.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis