Browse Element(s) Details


OsAffx.14927.1.S1_at

Description tigr:9633.m03005
TID=OsAffx.14927.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT000616 At1g52320F19K6_7
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3276011/11bZIP protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32710Os.25202.1.S1_at10/115+19071827..19074457isoamylase-type starch debranching enzyme ISO2, putative, expressed
LOC_Os05g32720Os.52751.1.S1_at11/115+19076997..19082958early-responsive to dehydration protein, putative, expressed
LOC_Os05g32730OsAffx.27123.1.S1_at11/115+19083431..19085092Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os05g32740Os.11575.4.S1_x_at11/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32740Os.11575.2.S1_a_at10/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32740Os.11575.3.S1_x_at8/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32750OsAffx.20858.1.S1_x_at10/115+19092111..19092868hypothetical protein
LOC_Os05g32750OsAffx.20858.4.S1_x_at9/115+19092111..19092868hypothetical protein
LOC_Os05g32760OsAffx.14927.1.S1_at11/115+19095361..19100596bZIP protein, putative, expressed
LOC_Os05g32760Os.47700.1.A1_at11/115+19095361..19100596bZIP protein, putative, expressed
LOC_Os05g32770OsAffx.27124.1.S1_at7/115+19111120..19113929hypothetical protein
LOC_Os05g32770OsAffx.24473.1.S1_at6/115+19111120..19113929hypothetical protein
LOC_Os05g32780OsAffx.27125.1.S1_at11/115+19120545..19121846hypothetical protein
LOC_Os05g32790OsAffx.14928.1.S1_at11/115+19124913..19125310hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14927.1.S1_at--1086--4771Chr05:19099574..19099598 (25 bp)
GCTGCCTGATGATCTTGCCAAGACT
LOC_Os05g32760
OsAffx.14927.1.S1_at--995--4311Chr05:19099600..19099624 (25 bp)
CCATTGTCAGTTTTAGGGCAGTCCT
LOC_Os05g32760
OsAffx.14927.1.S1_at--188--8151Chr05:19099616..19099640 (25 bp)
GGCAGTCCTGGACACCATATTAAGT
LOC_Os05g32760
OsAffx.14927.1.S1_at--48--8071Chr05:19099667..19099691 (25 bp)
GGAGACTTGTGAACACACTCGCAAG
LOC_Os05g32760
OsAffx.14927.1.S1_at--463--8891Chr05:19099718..19099742 (25 bp)
TGAGGATTGGTATCACAAGCACGCA
LOC_Os05g32760
OsAffx.14927.1.S1_at--97--8011Chr05:19100438..19100461 (24 bp)
GGATGGACAGATGGAGCCGACACAT
LOC_Os05g32760
OsAffx.14927.1.S1_at--774--5871Chr05:19100450..19100474 (25 bp)
GAGCCGACACATCAGATTGAGGACT
LOC_Os05g32760
OsAffx.14927.1.S1_at--23--5691Chr05:19100471..19100495 (25 bp)
GACTTGCCCGTTATTTACGTGCGGA
LOC_Os05g32760
OsAffx.14927.1.S1_at--740--2411Chr05:19100495..19100519 (25 bp)
AAAAAGGGCACTTCAGGTCGCTCAG
LOC_Os05g32760
OsAffx.14927.1.S1_at--124--9671Chr05:19100516..19100540 (25 bp)
TCAGCCTCAAGTATAGTCCCAGTTT
LOC_Os05g32760
OsAffx.14927.1.S1_at--920--6791Chr05:19100537..19100561 (25 bp)
GTTTTATTCATGTCACTCAACCGCA
LOC_Os05g32760
Target Sequence 
GCTGCCTGATGATCTTGCCAAGACTGCCATTGTCAGTTTTAGGGCAGTCCTGGACACCATATTAAGTGTTCAAGATGAAG
AGTTGAAACAAAAGGAGACTTGTGAACACACTCGCAAGGAATACATGCGGAAGGCTCGGGCTTTTGAGGATTGGTATCAC
AAGCACGCACAGCGCAGGGCGTTCGACGTTGATCCAGAGAGTGGCGAGGGGACAAGCCAAAAGGACACAGTTGCGGAGAA
GAGATTTGCCGTGGAGAGCTTGAAGAACAAGCTGGACGACGAGGTCGAAGCCCACAACAAGCTGTCGAAGCAAGTCAGGG
AGAAGTCCCTTTCGATCCTGAAAGCGCACCTGCCTGAGTTGTTCCGTGCCCTCACCGACTTCTCTCTTGCTTCTTTCGAG
ATGTACTCGAAGATGAGGTTGATGTCACTCATGCAGGATCAGGATGGACAGATGGAGCCGACACATCAGATTGAGGACTT
GCCCGTTATTTACGTGCGGAAAAAGGGCACTTCAGGTCGCTCAGCCTCAAGTATAGTCCCAGTTTTATTCATGTCACTCA
ACCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis