Browse Element(s) Details


OsAffx.20858.1.S1_x_at

Description gb:NM_193359.1
DB_XREF= gi:34913801
GEN=OSJNBa0026J14.29
TID=OsAffx.20858.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0026J14.29 (OSJNBa0026J14.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3670011/11hypothetical protein
LOC_Os05g3275010/11hypothetical protein
LOC_Os09g0850010/11hypothetical protein
LOC_Os07g1076010/11hypothetical protein
LOC_Os08g404707/11hypothetical protein
LOC_Os02g264906/11hypothetical protein
LOC_Os03g464305/11hypothetical protein
LOC_Os01g084905/11hypothetical protein
LOC_Os02g474805/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36670Os.27582.1.A1_at11/111+20678376..20691220expressed protein
LOC_Os01g36670Os.27582.1.A1_a_at11/111+20678376..20691220expressed protein
LOC_Os01g36680OsAffx.19542.3.S1_x_at8/111+20692999..20697221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g36690NANA1+20700588..20701642hypothetical protein
LOC_Os01g36700OsAffx.20858.1.S1_x_at11/111+20704640..20705397hypothetical protein
LOC_Os01g36700OsAffx.20858.4.S1_x_at8/111+20704640..20705397hypothetical protein
LOC_Os01g36710Os.49399.1.S1_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.2.S1_a_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.4.S1_x_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.3.S1_x_at8/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36720OsAffx.21244.1.S1_at10/111+20713042..20715241Major Facilitator Superfamily protein
LOC_Os01g36730NANA1+20717930..20721104hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20858.1.S1_x_at--503--5152Chr09:4436949..4436973 (25 bp)
GCAACAGTTCCCCACTATTGAGAGG
LOC_Os09g08500
OsAffx.20858.1.S1_x_at--216--6038Chr09:4436968..4436992 (25 bp)
GAGAGGACTACCGTGGCTAGACCAA
LOC_Os09g08500
OsAffx.20858.1.S1_x_at--112--2819Chr09:4437031..4437055 (25 bp)
AAGATACTTGTGTCGGCGTGGTTGC
LOC_Os09g08500
OsAffx.20858.1.S1_x_at--193--1198Chr09:4437061..4437085 (25 bp)
AGTTTGGATCCAGTGCTAGGCACAA
LOC_Os09g08500
OsAffx.20858.1.S1_x_at--876--1999Chr09:4437091..4437115 (25 bp)
ACTCGTGCTGCATATTGGACTAGAA
LOC_Os09g08500
OsAffx.20858.1.S1_x_at--910--2839Chr09:4437139..4437162 (24 bp)
AAGTAAATCCACACCAGATCGCAGC
LOC_Os09g08500
OsAffx.20858.1.S1_x_at--541--1296Chr09:4437153..4437177 (25 bp)
AGATCGCAGCCAGAATTCACTTATG
LOC_Os09g08500
OsAffx.20858.1.S1_x_at--546--74Chr08:25473927..25473951 (25 bp)
ATTGCTCAGGCCATTGCTGTATTTA
LOC_Os08g40470
OsAffx.20858.1.S1_x_at--393--2815Chr09:4437406..4437430 (25 bp)
AAGATAAGCCCTTCCAATTCCTGCA
LOC_Os09g08500
OsAffx.20858.1.S1_x_at--896--5095Chr09:4437428..4437452 (25 bp)
GCACTGTTGGACTCTCTTGAGGTCA
LOC_Os09g08500
OsAffx.20858.1.S1_x_at--264--354Chr09:4437483..4437507 (25 bp)
ATAACATCCCAAAAACCCTGTGCCA
LOC_Os09g08500
Target Sequence 
GCAACAGTTCCCCACTATTGAGAGGACTACCGTGGCTAGACCAAATCAAAAAAGATCGAAGAATTTTAGTGAACAAGAAG
ATAAGATACTTGTGTCGGCGTGGTTGCATGTAAGTTTGGATCCAGTGCTAGGCACAAATCAAACTCGTGCTGCATATTGG
ACTAGAATATACGAGCACTTATACAAAACAAGTAAATCCACACCAGATCGCAGCCAGAATTCACTTATGCATCGTTGGAA
AACTATACAAGAGAATGTCAACAAGTTTTGTGGATATCTGAGCCAGATTGAGGGTAGAAGACAAAGCGGGGTTAGTATAC
ACGACAAGATTGCTCAGGCCATTGCTGTATTTAAGGAGTTGGAAGATAAGCCCTTCCAATTCCTGCACTGTTGGACTCTC
TTGAGGTCACAATCCAAGTGGCATGATAAGATGAAGCAAATAACATCCCAAAAACCCTGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20858.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis