Browse Element(s) Details


Os.27582.1.A1_a_at

Description gb:AK073447.1
DB_XREF= gi:32983470
TID=Os.27582.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0026J14.26 (OSJNBa0026J14.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033045B17, full insert sequence.
FL= gb:AK073447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3667011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36640NANA1+20655983..20658700NB-ARC domain containing protein
LOC_Os01g36650OsAffx.21246.2.S1_s_at11/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.2.S1_at10/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.1.S1_at6/111+20660606..20663457expressed protein
LOC_Os01g36660Os.40947.1.A1_at11/111+20664958..20668746Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g36670Os.27582.1.A1_at11/111+20678376..20691220expressed protein
LOC_Os01g36670Os.27582.1.A1_a_at11/111+20678376..20691220expressed protein
LOC_Os01g36680OsAffx.19542.3.S1_x_at8/111+20692999..20697221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g36690NANA1+20700588..20701642hypothetical protein
LOC_Os01g36700OsAffx.20858.1.S1_x_at11/111+20704640..20705397hypothetical protein
LOC_Os01g36700OsAffx.20858.4.S1_x_at8/111+20704640..20705397hypothetical protein
LOC_Os01g36710Os.49399.1.S1_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.2.S1_a_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.4.S1_x_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.3.S1_x_at8/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36720OsAffx.21244.1.S1_at10/111+20713042..20715241Major Facilitator Superfamily protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27582.1.A1_a_at--1068--8131Chr01:20678812..20678836 (25 bp)
GGAAATGGTACTGCTCATCATGTGC
LOC_Os01g36670
Os.27582.1.A1_a_at--1066--811Chr01:20678808..20678832 (25 bp)
ATGGTACTGCTCATCATGTGCGATA
LOC_Os01g36670
Os.27582.1.A1_a_at--1100--1971Chr01:20678803..20678827 (25 bp)
ACTGCTCATCATGTGCGATAGAGAG
LOC_Os01g36670
Os.27582.1.A1_a_at--307--4151Chr01:20678761..20678785 (25 bp)
CGCGGCATGAGAAAAGGATGCTGAA
LOC_Os01g36670
Os.27582.1.A1_a_at--862--611Chr01:20678744..20678768 (25 bp)
ATGCTGAAACTCCATAGGAAGGATG
LOC_Os01g36670
Os.27582.1.A1_a_at--493--10091Chr01:20678730..20678754 (25 bp)
TAGGAAGGATGATCCTGGGCTGCAA
LOC_Os01g36670
Os.27582.1.A1_a_at--259--8331Chr01:20678713..20678737 (25 bp)
GGCTGCAAGGCATGAGATATGAAAT
LOC_Os01g36670
Os.27582.1.A1_a_at--817--2971Chr01:20678691..20678715 (25 bp)
AATGGTGGACATGATACTCGCTGCT
LOC_Os01g36670
Os.27582.1.A1_a_at--394--8531Chr01:20678686..20678710 (25 bp)
TGGACATGATACTCGCTGCTGCGGA
LOC_Os01g36670
Os.27582.1.A1_a_at--376--2111Chr01:20678683..20678707 (25 bp)
ACATGATACTCGCTGCTGCGGAGAT
LOC_Os01g36670
Os.27582.1.A1_a_at--456--9111Chr01:20678670..20678694 (25 bp)
TGCTGCGGAGATGCTTAGCGATGAT
LOC_Os01g36670
Target Sequence 
GGAAATGGTACTGCTCATCATGTGCGATAGAGAGAGCAAAGGAGGGGATGGCGCGGCATGAGAAAAGGATGCTGAAACTC
CATAGGAAGGATGATCCTGGGCTGCAAGGCATGAGATATGAAATGGTGGACATGATACTCGCTGCTGCGGAGATGCTTAG
CGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27582.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis