Browse Element(s) Details


OsAffx.21246.1.S1_at

Description gb:NM_193354.1
DB_XREF= gi:34913791
GEN=OSJNBa0026J14.24
TID=OsAffx.21246.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0026J14.24 (OSJNBa0026J14.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g366506/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36590OsAffx.21247.2.S1_s_at11/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.1.S1_at10/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.2.S1_at9/111+20631731..20637232nodulin, putative
LOC_Os01g36600Os.9812.1.S1_at10/111+20639797..20641027pentatricopeptide, putative, expressed
LOC_Os01g36610OsAffx.9010.1.S1_at11/111+20641163..20642953pentatricopeptide, putative
LOC_Os01g36620Os.35614.1.S1_at11/111+20644725..20646202Pectate lyase family protein, expressed
LOC_Os01g36630Os.33852.1.S1_at10/111+20649545..20653223jmjC domain containing protein, expressed
LOC_Os01g36640NANA1+20655983..20658700NB-ARC domain containing protein
LOC_Os01g36650OsAffx.21246.2.S1_s_at11/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.2.S1_at10/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.1.S1_at6/111+20660606..20663457expressed protein
LOC_Os01g36660Os.40947.1.A1_at11/111+20664958..20668746Carboxyl-terminal proteinase, putative, expressed
LOC_Os01g36670Os.27582.1.A1_at11/111+20678376..20691220expressed protein
LOC_Os01g36670Os.27582.1.A1_a_at11/111+20678376..20691220expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21246.1.S1_at--349--3191Chr01:20662356..20662380 (25 bp)
CAATCAGCGGTCCAGTGCTACCATA
LOC_Os01g36650
OsAffx.21246.1.S1_at--851--5591Chr01:20662323..20662347 (25 bp)
GACAATCTTCTTCCAGGTTACAGGC
LOC_Os01g36650
OsAffx.21246.1.S1_at--637--6771Chr01:20662307..20662331 (25 bp)
GTTACAGGCCATGCCATTCCAACAG
LOC_Os01g36650
OsAffx.21246.1.S1_at--423--331NONE
ATACTTACTGGTCATGCATCCTAAC
NONE
OsAffx.21246.1.S1_at--971--1192Chr01:20660846..20660929 (25 bp)
AGTTTACAGTGCCAGGTCCATGAAT
LOC_Os01g36650
OsAffx.21246.1.S1_at--494--7792Chr01:20660832..20660856 (25 bp)
GGTCCATGAATCTCACGCTTGAAAG
LOC_Os01g36650
OsAffx.21246.1.S1_at--711--7091Chr01:20660800..20660824 (25 bp)
GTCACCAACAACATTACAGTCAGAT
LOC_Os01g36650
OsAffx.21246.1.S1_at--935--2131NONE
ACAGTCAGATTTCAAGCAGCAGTCA
NONE
OsAffx.21246.1.S1_at--327--1511Chr01:20659510..20659534 (25 bp)
AGCAGCGACGGTGAAGCCACCTCAG
NONE
OsAffx.21246.1.S1_at--555--4412Chr05:11450989..11451451 (25 bp)
GCCACCTCAGGTGCGGATGACTAAT
NONE
OsAffx.21246.1.S1_at--978--8491Chr01:20659471..20659495 (25 bp)
TGGCAGAGTACCAGATTCCATGGAA
NONE
Target Sequence 
CAATCAGCGGTCCAGTGCTACCATACCACACCGGACAATCTTCTTCCAGGTTACAGGCCATGCCATTCCAACAGCAACAA
TCCAATCCAATACGAAACGGTTTTGATTTACAGGACGTATACTTACTGGTCATGCATCCTAACATAACAACAGCAGCTGA
GAGCATTTATTGGTATGCAGACACTCTTCATGCTGCATCATCAAGAACTTCCATTTGGTTGCTGGGAGCACAACAAAAGA
ATGCAGAGGATGGGAGCATTCAACAGTGGTCAACTGGTCAAGTATCCAGGATTCCTAAAGAAATAGGTTATGCAATGGTG
CAAGCACAAGTTTACAGTGCCAGGTCCATGAATCTCACGCTTGAAAGAAGTAATGTCACCAACAACATTACAGTCAGATT
TCAAGCAGCAGTCAGCACCCATATCCGCATCCCTCTTCTGCGTCAGCCCCTTTCCTCCGCCTCACCGCTGCTTCCCATCG
TGCGTCTGCGATCTACCTCCACAGCAGCGACGGTGAAGCCACCTCAGGTGCGGATGACTAATGGCAGAGTACCAGATTCC
ATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis