Browse Element(s) Details


OsAffx.9010.1.S1_at

Description tigr:9629.m03456
TID=OsAffx.9010.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3661011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36560OsAffx.2166.1.S1_at11/111+20614702..20617477Integral membrane protein DUF6 containing protein
LOC_Os01g36570OsAffx.11352.1.S1_at8/111+20619437..20619733Glycine-rich protein 2, putative
LOC_Os01g36580Os.24515.1.S1_at10/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36580Os.24515.2.S1_at2/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36590OsAffx.21247.2.S1_s_at11/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.1.S1_at10/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.2.S1_at9/111+20631731..20637232nodulin, putative
LOC_Os01g36600Os.9812.1.S1_at10/111+20639797..20641027pentatricopeptide, putative, expressed
LOC_Os01g36610OsAffx.9010.1.S1_at11/111+20641163..20642953pentatricopeptide, putative
LOC_Os01g36620Os.35614.1.S1_at11/111+20644725..20646202Pectate lyase family protein, expressed
LOC_Os01g36630Os.33852.1.S1_at10/111+20649545..20653223jmjC domain containing protein, expressed
LOC_Os01g36640NANA1+20655983..20658700NB-ARC domain containing protein
LOC_Os01g36650OsAffx.21246.2.S1_s_at11/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.2.S1_at10/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.1.S1_at6/111+20660606..20663457expressed protein
LOC_Os01g36660Os.40947.1.A1_at11/111+20664958..20668746Carboxyl-terminal proteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9010.1.S1_at--436--7951Chr01:20642353..20642377 (25 bp)
GGATATGCGCCCTAATGCTGCCAGG
LOC_Os01g36610
OsAffx.9010.1.S1_at--1087--5111Chr01:20642407..20642431 (25 bp)
GCACAGCCCTAGCTTGGCAATTTAT
LOC_Os01g36610
OsAffx.9010.1.S1_at--751--10031Chr01:20642442..20642466 (25 bp)
TAGAGTGCTTCTGCCAATGTGACAT
LOC_Os01g36610
OsAffx.9010.1.S1_at--176--5931Chr01:20642538..20642562 (25 bp)
GAGCACTCATAACCTGCTTTTGCAG
LOC_Os01g36610
OsAffx.9010.1.S1_at--724--6591Chr01:20642605..20642629 (25 bp)
GATTGAATCTGGCTTCCAACCAAAT
LOC_Os01g36610
OsAffx.9010.1.S1_at--295--3151Chr01:20642695..20642719 (25 bp)
AATTCTGAGGGCTTTTGTTCTTGAT
LOC_Os01g36610
OsAffx.9010.1.S1_at--292--10671Chr01:20642720..20642744 (25 bp)
TTCCATGTCCATTGCAACGAAAGCT
LOC_Os01g36610
OsAffx.9010.1.S1_at--208--6311Chr01:20642755..20642779 (25 bp)
GATGAGAGCTTACTGCGAAACCACA
LOC_Os01g36610
OsAffx.9010.1.S1_at--550--8631Chr01:20642823..20642847 (25 bp)
TGGGTTTTGTCCCAAACAGTGAGAC
LOC_Os01g36610
OsAffx.9010.1.S1_at--311--1271Chr01:20642852..20642876 (25 bp)
AGATCACTTATTCTTGGCCTTTCAA
LOC_Os01g36610
OsAffx.9010.1.S1_at--353--2331Chr01:20642877..20642901 (25 bp)
AAAGTATTGATCTAGTTTCCAGTGA
LOC_Os01g36610
Target Sequence 
GGATATGCGCCCTAATGCTGCCAGGGGTTTGTTGCATTGGATGATAGAGGATGGGCACAGCCCTAGCTTGGCAATTTATA
ATATGATCATAGAGTGCTTCTGCCAATGTGACATTGTGGAGGAGGCTTTAGATGTCAAGGTTGAAATGATCTCAAGAGAA
GTGAGACTGGACTTCAATACTTATCGAGCACTCATAACCTGCTTTTGCAGGTTGGGAAGGAGCTTAGATGGTGAATCGAT
AATGGCAGAGATGATTGAATCTGGCTTCCAACCAAATGAAGCTATTTGTTCTGCATTGGTTTGTGGATTTTGCAAGGAAG
GAGCCCTTAATAGGGCAGAATTAATTCTGAGGGCTTTTGTTCTTGATTTCCATGTCCATTGCAACGAAAGCTATAATGCT
CTGATGAGAGCTTACTGCGAAACCACAAGCAGCAAGGAGTCATTAGAATTGCAGAACAGGATGTTGGAATTGGGTTTTGT
CCCAAACAGTGAGACATGCAGATCACTTATTCTTGGCCTTTCAAAAAGTATTGATCTAGTTTCCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis