Browse Element(s) Details


OsAffx.2166.1.S1_at

Description tigr:9629.m03451
TID=OsAffx.2166.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Integral membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3656011/11Integral membrane protein DUF6 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36510OsAffx.9013.1.S1_x_at11/111+20589075..20590880hypothetical protein
LOC_Os01g36520OsAffx.11351.1.S1_at10/111+20592580..20594071hypothetical protein
LOC_Os01g36530NANA1+20602596..20604968transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36540OsAffx.23530.1.S1_at11/111+20607702..20609411pentatricopeptide, putative, expressed
LOC_Os01g36550OsAffx.21248.1.S1_x_at10/111+20611294..20614312Protein kinase domain containing protein
LOC_Os01g36560OsAffx.2166.1.S1_at11/111+20614702..20617477Integral membrane protein DUF6 containing protein
LOC_Os01g36570OsAffx.11352.1.S1_at8/111+20619437..20619733Glycine-rich protein 2, putative
LOC_Os01g36580Os.24515.1.S1_at10/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36580Os.24515.2.S1_at2/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36590OsAffx.21247.2.S1_s_at11/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.1.S1_at10/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.2.S1_at9/111+20631731..20637232nodulin, putative
LOC_Os01g36600Os.9812.1.S1_at10/111+20639797..20641027pentatricopeptide, putative, expressed
LOC_Os01g36610OsAffx.9010.1.S1_at11/111+20641163..20642953pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2166.1.S1_at--426--5431Chr01:20615927..20615951 (25 bp)
GAACCTTCAGCATCTTTCTAGTCGA
LOC_Os01g36560
OsAffx.2166.1.S1_at--1066--1131Chr01:20615908..20615932 (25 bp)
AGTCGAAATGTCGTCCCTACTGGGA
LOC_Os01g36560
OsAffx.2166.1.S1_at--293--2091Chr01:20615824..20615848 (25 bp)
ACATCTTGGGCTCTTTGGACAGTTC
LOC_Os01g36560
OsAffx.2166.1.S1_at--411--10531Chr01:20615719..20615740 (22 bp)
TTCAGATAGTACTTCCTCAGGGCCT
LOC_Os01g36560
OsAffx.2166.1.S1_at--411--1051Chr01:20615686..20615710 (25 bp)
AGGTGTATCCCTCTAAGCTACTCAA
LOC_Os01g36560
OsAffx.2166.1.S1_at--150--3471Chr01:20615630..20615654 (25 bp)
CAGTGTTTCTTCATTGCTCTAGCAG
LOC_Os01g36560
OsAffx.2166.1.S1_at--177--10051Chr01:20615572..20615596 (25 bp)
TAGATGCAGGTCTTATCGCCGTGAT
LOC_Os01g36560
OsAffx.2166.1.S1_at--92--5111Chr01:20615058..20615082 (25 bp)
GCACTTGTGTCTGGACTTGCATACT
LOC_Os01g36560
OsAffx.2166.1.S1_at--906--8491Chr01:20615005..20615029 (25 bp)
TGGACCGGTTTTCTTGGCAATGACA
LOC_Os01g36560
OsAffx.2166.1.S1_at--1143--6591Chr01:20614966..20614990 (25 bp)
GATTGTCACAATAGTGCTCTCCTCA
LOC_Os01g36560
OsAffx.2166.1.S1_at--821--9511Chr01:20614768..20614792 (25 bp)
TCTCTACTGCGTTCTTTGGGCCAAG
LOC_Os01g36560
Target Sequence 
GAACCTTCAGCATCTTTCTAGTCGAAATGTCGTCCCTACTGGGAGTACTGCCTATACTACAAAGGCATGGACATCAGGGA
TCTTTTTAACAGTTTTATCTACAACATCTTGGGCTCTTTGGACAGTTCTTCAGATAGTACTTCCTCAGGGCCTTATGTTG
GAGGTGTATCCCTCTAAGCTACTCAACACAACTATCCAGATGGTCTTTGCAACCATTCAGTGTTTCTTCATTGCTCTAGC
AGTCGAAAGAGATTTTTCGCGGTGGAAGCTGGGACTAGATGCAGGTCTTATCGCCGTGATTTATTCAGGTGCACTTGTGT
CTGGACTTGCATACTACATGCAAGTATGGGTGATTGACAAGAGTGGACCGGTTTTCTTGGCAATGACAATGCCCATAACT
CTGATTGTCACAATAGTGCTCTCCTCATTTGTCTTGGGAGAAGCAGTCACCCTGGGAAGCATAATAAGTGGAGTGGTGAT
GGTTGGCGGTCTCTACTGCGTTCTTTGGGCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis