Browse Element(s) Details


OsAffx.11352.1.S1_at

Description gb:NM_193345.1
DB_XREF= gi:34913773
GEN=OSJNBa0026J14.15
TID=OsAffx.11352.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cold shock protein-like (OSJNBa0026J14.15), mRNA.
PROD=cold shock protein-like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g365708/11Glycine-rich protein 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36530NANA1+20602596..20604968transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36540OsAffx.23530.1.S1_at11/111+20607702..20609411pentatricopeptide, putative, expressed
LOC_Os01g36550OsAffx.21248.1.S1_x_at10/111+20611294..20614312Protein kinase domain containing protein
LOC_Os01g36560OsAffx.2166.1.S1_at11/111+20614702..20617477Integral membrane protein DUF6 containing protein
LOC_Os01g36570OsAffx.11352.1.S1_at8/111+20619437..20619733Glycine-rich protein 2, putative
LOC_Os01g36580Os.24515.1.S1_at10/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36580Os.24515.2.S1_at2/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36590OsAffx.21247.2.S1_s_at11/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.1.S1_at10/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.2.S1_at9/111+20631731..20637232nodulin, putative
LOC_Os01g36600Os.9812.1.S1_at10/111+20639797..20641027pentatricopeptide, putative, expressed
LOC_Os01g36610OsAffx.9010.1.S1_at11/111+20641163..20642953pentatricopeptide, putative
LOC_Os01g36620Os.35614.1.S1_at11/111+20644725..20646202Pectate lyase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11352.1.S1_at--1074--7571Chr01:20619295..20619319 (25 bp)
GGGCTGCCTCGAGTACCCTGAACTG
NONE
OsAffx.11352.1.S1_at--202--1191Chr01:20619306..20619330 (25 bp)
AGTACCCTGAACTGCCCGAGTCGAG
NONE
OsAffx.11352.1.S1_at--161--3831NONE
CTGCCCGAGTCGAGCGGCTGGCCAA
NONE
OsAffx.11352.1.S1_at--1004--5451Chr01:20619466..20619490 (25 bp)
GAAAGGGTTCGATGCCACTAATGGG
LOC_Os01g36570
OsAffx.11352.1.S1_at--1032--2011Chr01:20619482..20619506 (25 bp)
ACTAATGGGTTCAGCTTCATCACTC
LOC_Os01g36570
OsAffx.11352.1.S1_at--52--9611Chr01:20619498..20619522 (25 bp)
TCATCACTCCCGACGATGGCAGCGA
LOC_Os01g36570
OsAffx.11352.1.S1_at--832--3791Chr01:20619544..20619568 (25 bp)
CTCCCTCAAGTTCGATGGCTATCGG
LOC_Os01g36570
OsAffx.11352.1.S1_at--891--851Chr01:20619558..20619582 (25 bp)
ATGGCTATCGGAGCCTCAACGACGA
LOC_Os01g36570
OsAffx.11352.1.S1_at--822--5771Chr01:20619581..20619605 (25 bp)
GACGATGTCATCGAGTTATCTGTTG
LOC_Os01g36570
OsAffx.11352.1.S1_at--789--1211Chr01:20619594..20619618 (25 bp)
AGTTATCTGTTGGATCCAGCGACGA
LOC_Os01g36570
OsAffx.11352.1.S1_at--297--1951Chr01:20619644..20619668 (25 bp)
ACGGCGCCAGGCAGTGACGCGCACA
LOC_Os01g36570
Target Sequence 
GGGCTGCCTCGAGTACCCTGAACTGCCCGAGTCGAGCGGCTGGCCAACGGAGCGGGGCGGCGGGCGGCTTCTAGGGTTCG
GCGGCGAGGGCGAGATGGTGTCGGAGAGGGTGAAAGGGATGGTGAAAGGGTTCGATGCCACTAATGGGTTCAGCTTCATC
ACTCCCGACGATGGCAGCGAGGATCTCTTCATCCACCAGTCCTCCCTCAAGTTCGATGGCTATCGGAGCCTCAACGACGA
CGATGTCATCGAGTTATCTGTTGGATCCAGCGACGACGGCCGCACTAAGGCCGTGGACGTCACGGCGCCAGGCAGTGACG
CGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis