Browse Element(s) Details


OsAffx.23530.1.S1_at

Description tigr:9629.m03448
TID=OsAffx.23530.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3654011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36500OsAffx.719.1.S1_x_at11/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.3.S1_at10/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.1.S1_s_at8/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.4.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.9446.1.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.8277.2.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36510OsAffx.9013.1.S1_x_at11/111+20589075..20590880hypothetical protein
LOC_Os01g36520OsAffx.11351.1.S1_at10/111+20592580..20594071hypothetical protein
LOC_Os01g36530NANA1+20602596..20604968transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36540OsAffx.23530.1.S1_at11/111+20607702..20609411pentatricopeptide, putative, expressed
LOC_Os01g36550OsAffx.21248.1.S1_x_at10/111+20611294..20614312Protein kinase domain containing protein
LOC_Os01g36560OsAffx.2166.1.S1_at11/111+20614702..20617477Integral membrane protein DUF6 containing protein
LOC_Os01g36570OsAffx.11352.1.S1_at8/111+20619437..20619733Glycine-rich protein 2, putative
LOC_Os01g36580Os.24515.1.S1_at10/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36580Os.24515.2.S1_at2/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36590OsAffx.21247.2.S1_s_at11/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.1.S1_at10/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.2.S1_at9/111+20631731..20637232nodulin, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23530.1.S1_at--622--8031Chr01:20608830..20608854 (25 bp)
GGAGTGTTCTTCCAAATGCCTGATA
LOC_Os01g36540
OsAffx.23530.1.S1_at--1051--1711Chr01:20608888..20608912 (25 bp)
ACCTTGGTTCTCACGGGTTTGCAAT
LOC_Os01g36540
OsAffx.23530.1.S1_at--342--7371Chr01:20608945..20608969 (25 bp)
GTGACAAGCTCAAGCCTGACAGCGT
LOC_Os01g36540
OsAffx.23530.1.S1_at--380--8951Chr01:20608961..20608985 (25 bp)
TGACAGCGTAACCTTCTCAGCATTA
LOC_Os01g36540
OsAffx.23530.1.S1_at--829--4731Chr01:20608996..20609020 (25 bp)
GCTGTCATGCAGGTCTCTTGGAGGA
LOC_Os01g36540
OsAffx.23530.1.S1_at--210--7391Chr01:20609094..20609118 (25 bp)
GTGAGGCTTCTTGCAACATTTGGTC
LOC_Os01g36540
OsAffx.23530.1.S1_at--663--7811Chr01:20609136..20609160 (25 bp)
GGTCTTATACAAACGATGCCAGCAC
LOC_Os01g36540
OsAffx.23530.1.S1_at--545--7911Chr01:20609196..20609220 (25 bp)
GGTTGCTGTGTCCATCGTGATTCCA
LOC_Os01g36540
OsAffx.23530.1.S1_at--217--10671Chr01:20609216..20609240 (25 bp)
TTCCAGCCTTGGTAGGATCGTTGCT
LOC_Os01g36540
OsAffx.23530.1.S1_at--176--5611Chr01:20609265..20609289 (25 bp)
GACAAGGCTTCCTACAGGGTCATGC
LOC_Os01g36540
OsAffx.23530.1.S1_at--627--4871Chr01:20609288..20609312 (25 bp)
GCTTTCAAACCTTTATGCATCCCAG
LOC_Os01g36540
Target Sequence 
GGAGTGTTCTTCCAAATGCCTGATAAGAATTTAGTTATGTACAATACAGTCATATCAAACCTTGGTTCTCACGGGTTTGC
AATGAAAGCTATTGAAGTCCTTGATGAGATGGTAAGTGACAAGCTCAAGCCTGACAGCGTAACCTTCTCAGCATTACTTG
CTGCATGCTGTCATGCAGGTCTCTTGGAGGAAGGGTGGAAGTTGTTTAGGAGAATGAGAGATGAGTTCAACATGGCGGTT
AAAACAGAGCACTATGTATATATTGTGAGGCTTCTTGCAACATTTGGTCAGCTCAAGGAGGCGTATGGTCTTATACAAAC
GATGCCAGCACCAGCAGATTCTGGTGTGTGGGGAGCATTGCTTTGGGGTTGCTGTGTCCATCGTGATTCCAGCCTTGGTA
GGATCGTTGCTGACAAGCTCTTTGAGTTATATCCAGACAAGGCTTCCTACAGGGTCATGCTTTCAAACCTTTATGCATCC
CAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis