Browse Element(s) Details


OsAffx.9446.1.S1_at

Description tigr:9629.m05295
TID=OsAffx.9446.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5431011/11hypothetical protein
LOC_Os01g365001/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54290NANA1+31561363..31565748retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g54300Os.2123.1.S1_at11/111+31579722..31581752glycosyl hydrolase family 5 protein, putative, expressed
LOC_Os01g54310OsAffx.9446.1.S1_at11/111+31582626..31582931hypothetical protein
LOC_Os01g54320OsAffx.23786.1.S1_at10/111+31589851..31590054hypothetical protein
LOC_Os01g54330OsAffx.11600.1.S1_at10/111+31593548..31595101hypothetical protein
LOC_Os01g54340Os.40424.1.S1_at11/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54340Os.12793.1.S1_x_at10/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54350Os.2128.1.S1_at11/111+31602090..31606233protein kinase, putative, expressed
LOC_Os01g54360OsAffx.23787.2.S1_x_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.1.S1_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.2.S1_at2/111+31607700..31610060hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9446.1.S1_at--851--8911Chr01:31582864..31582888 (25 bp)
TGAGCGTGGGCTACTACGATGGCCG
LOC_Os01g54310
OsAffx.9446.1.S1_at--1077--1871Chr01:31582849..31582873 (25 bp)
ACGATGGCCGGGATGGAACTCTCGC
LOC_Os01g54310
OsAffx.9446.1.S1_at--867--2532Chr01:31582833..31582857 (25 bp)
AACTCTCGCCGGAGTGGATAAACGT
LOC_Os01g54310
OsAffx.9446.1.S1_at--227--8491Chr01:31582768..31582792 (25 bp)
TGGCATGGACAATGGAGGACCTGCT
LOC_Os01g54310
OsAffx.9446.1.S1_at--768--8551Chr01:31582756..31582780 (25 bp)
TGGAGGACCTGCTCACGATAGCCAC
LOC_Os01g54310
OsAffx.9446.1.S1_at--68--4071Chr01:31582725..31582749 (25 bp)
CGAGCTTTGTTGTGGCGCGTGGACA
LOC_Os01g54310
OsAffx.9446.1.S1_at--12--971Chr01:31582696..31582720 (25 bp)
AGGACCTGCTCAATGTGAAAGACGT
LOC_Os01g54310
OsAffx.9446.1.S1_at--145--4291Chr01:31582692..31582716 (25 bp)
CCTGCTCAATGTGAAAGACGTGGCC
LOC_Os01g54310
OsAffx.9446.1.S1_at--348--1392Chr03:22222041..22222062 (22 bp)
AGACGTGGCCGCTAGCGACGAGCTT
NONE
OsAffx.9446.1.S1_at--86--1651Chr01:31582664..31582688 (25 bp)
AGCGACGAGCTTCGACATGAGGCAT
LOC_Os01g54310
OsAffx.9446.1.S1_at--609--1551Chr01:31582657..31582681 (25 bp)
AGCTTCGACATGAGGCATGGACGTT
LOC_Os01g54310
Target Sequence 
TGAGCGTGGGCTACTACGATGGCCGGGATGGAACTCTCGCCGGAGTGGATAAACGTGGAGCGAGGATGACGAAGCCGTCG
GCGACAAGCTCCGGCGTGGCATGGACAATGGAGGACCTGCTCACGATAGCCACCGGCGACGAGCTTTGTTGTGGCGCGTG
GACAGTGGAGGACCTGCTCAATGTGAAAGACGTGGCCGCTAGCGACGAGCTTCGACATGAGGCATGGACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis