Browse Element(s) Details


OsAffx.23786.1.S1_at

Description gb:NM_191192.1
DB_XREF= gi:34909467
GEN=P0481E12.4
TID=OsAffx.23786.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0481E12.4 (P0481E12.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5432010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54290NANA1+31561363..31565748retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g54300Os.2123.1.S1_at11/111+31579722..31581752glycosyl hydrolase family 5 protein, putative, expressed
LOC_Os01g54310OsAffx.9446.1.S1_at11/111+31582626..31582931hypothetical protein
LOC_Os01g54320OsAffx.23786.1.S1_at10/111+31589851..31590054hypothetical protein
LOC_Os01g54330OsAffx.11600.1.S1_at10/111+31593548..31595101hypothetical protein
LOC_Os01g54340Os.40424.1.S1_at11/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54340Os.12793.1.S1_x_at10/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54350Os.2128.1.S1_at11/111+31602090..31606233protein kinase, putative, expressed
LOC_Os01g54360OsAffx.23787.2.S1_x_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.1.S1_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.2.S1_at2/111+31607700..31610060hypothetical protein
LOC_Os01g54370Os.2131.1.S1_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54370Os.2131.1.S1_s_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54380Os.2132.1.S1_s_at11/111+31613517..31614882pentatricopeptide, putative, expressed
LOC_Os01g54390Os.33221.1.S1_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54390Os.33221.2.S1_x_at11/111+31615018..31619643S4 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23786.1.S1_at--188--5291Chr01:31589886..31589910 (25 bp)
GAAGGCGAGGCCTGATACGGCACCC
LOC_Os01g54320
OsAffx.23786.1.S1_at--440--4471Chr01:31589895..31589919 (25 bp)
GCCTGATACGGCACCCGGGTGGCAT
LOC_Os01g54320
OsAffx.23786.1.S1_at--10--931Chr01:31589902..31589926 (25 bp)
ACGGCACCCGGGTGGCATTTCCGCA
LOC_Os01g54320
OsAffx.23786.1.S1_at--1008--4991Chr01:31589936..31589960 (25 bp)
GCATGGAGAGTGCATGGTGGCACGT
LOC_Os01g54320
OsAffx.23786.1.S1_at--1154--891Chr01:31589963..31589987 (25 bp)
AGGCGGAGCCAAAATCTGGTGCCCT
LOC_Os01g54320
OsAffx.23786.1.S1_at--44--5871Chr01:31589968..31589992 (25 bp)
GAGCCAAAATCTGGTGCCCTGACGG
LOC_Os01g54320
OsAffx.23786.1.S1_at--849--2271Chr01:31589974..31589998 (25 bp)
AAATCTGGTGCCCTGACGGCGCTTC
LOC_Os01g54320
OsAffx.23786.1.S1_at--688--4191Chr01:31589984..31590008 (25 bp)
CCCTGACGGCGCTTCTGTCTGGGTG
LOC_Os01g54320
OsAffx.23786.1.S1_at--432--1951Chr01:31589989..31590013 (25 bp)
ACGGCGCTTCTGTCTGGGTGGAGCA
LOC_Os01g54320
OsAffx.23786.1.S1_at--540--2891Chr01:31590029..31590053 (25 bp)
AAGGGTGTGGCGACACCACAACCTA
LOC_Os01g54320
OsAffx.23786.1.S1_at--825--7471Chr01:31590033..31590057 (25 bp)
GTGTGGCGACACCACAACCTAGCGC
NONE
Target Sequence 
GAAGGCGAGGCCTGATACGGCACCCGGGTGGCATTTCCGCAGGGGAGCGGGCATGGAGAGTGCATGGTGGCACGTGGAGG
CGGAGCCAAAATCTGGTGCCCTGACGGCGCTTCTGTCTGGGTGGAGCAGGGGAGCGGCGCGGCAAGGGTGTGGCGACACC
ACAACCTAGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis