Browse Element(s) Details


Os.12793.1.S1_x_at

Description gb:NM_191194.1
DB_XREF= gi:34909471
GEN=P0481E12.6
TID=Os.12793.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.6 (P0481E12.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0481E12.6 (P0481E12.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5434010/11uncharacterized plant-specific domain TIGR01615 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54300Os.2123.1.S1_at11/111+31579722..31581752glycosyl hydrolase family 5 protein, putative, expressed
LOC_Os01g54310OsAffx.9446.1.S1_at11/111+31582626..31582931hypothetical protein
LOC_Os01g54320OsAffx.23786.1.S1_at10/111+31589851..31590054hypothetical protein
LOC_Os01g54330OsAffx.11600.1.S1_at10/111+31593548..31595101hypothetical protein
LOC_Os01g54340Os.40424.1.S1_at11/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54340Os.12793.1.S1_x_at10/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54350Os.2128.1.S1_at11/111+31602090..31606233protein kinase, putative, expressed
LOC_Os01g54360OsAffx.23787.2.S1_x_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.1.S1_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.2.S1_at2/111+31607700..31610060hypothetical protein
LOC_Os01g54370Os.2131.1.S1_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54370Os.2131.1.S1_s_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54380Os.2132.1.S1_s_at11/111+31613517..31614882pentatricopeptide, putative, expressed
LOC_Os01g54390Os.33221.1.S1_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54390Os.33221.2.S1_x_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12793.1.S1_x_at--907--931Chr01:31599690..31599714 (25 bp)
AGGCAATCAGGAAGATGCGCGCCGC
LOC_Os01g54340
Os.12793.1.S1_x_at--1029--4591Chr01:31599798..31599822 (25 bp)
GCGACGCCGGGTACAACAGCGCCAT
LOC_Os01g54340
Os.12793.1.S1_x_at--923--1651Chr01:31599815..31599839 (25 bp)
AGCGCCATCTGCAAGTCCAAGTGGA
LOC_Os01g54340
Os.12793.1.S1_x_at--64--8131NONE
GGACATCCCTTCAGGCGAGCACAGC
NONE
Os.12793.1.S1_x_at--160--3491Chr01:31600576..31600600 (25 bp)
CAGGCGAGCACAGCTACGTGGACGT
LOC_Os01g54340
Os.12793.1.S1_x_at--1124--8611Chr01:31600639..31600663 (25 bp)
TGGTGGAGCTGAACTTCCGCGCCGA
LOC_Os01g54340
Os.12793.1.S1_x_at--308--4571Chr01:31600771..31600795 (25 bp)
GCGCCGCGGCCAAGCAGTGCATGAA
LOC_Os01g54340
Os.12793.1.S1_x_at--992--5971Chr01:31600797..31600821 (25 bp)
GAGAACAACATGCACATGGGCCCCT
LOC_Os01g54340
Os.12793.1.S1_x_at--856--8391Chr01:31600815..31600839 (25 bp)
GGCCCCTGGAGGAAGCACAAGTACA
LOC_Os01g54340
Os.12793.1.S1_x_at--1125--9871Chr01:31600836..31600860 (25 bp)
TACATGCAGTCCAAGTGGCTCGGCA
LOC_Os01g54340
Os.12793.1.S1_x_at--468--1371Chr01:31600921..31600945 (25 bp)
AGACCAAGTTCAGGGCGTCCATGCT
LOC_Os01g54340
Target Sequence 
AGGCAATCAGGAAGATGCGCGCCGCGGGCGCCGTCTGCTCCTGCGCGAGGCGGGCGGCGGCCGGGGACTGCCGGAGCTGC
ACGCTCCGGCATGTCGACGAGCGGCTGCGCGACGCCGGGTACAACAGCGCCATCTGCAAGTCCAAGTGGACGCGCTCGCC
GGACATCCCTTCAGGCGAGCACAGCTACGTGGACGTGGTGGTGCAGACGAGGAGCGGCAAGGCGGTGCGGGTGGTGGTGG
AGCTGAACTTCCGCGCCGAGTTCGAGGTGGCCCGCGCCAGCGCGGAGTACCGCGCGCTGGTGACCGCGCTGCCGGAGGTG
TTCGTCGGACGCGCCGACCGGCTGCGCGCCGTCGTCAAGGCCATGTGCGCCGCGGCCAAGCAGTGCATGAAGGAGAACAA
CATGCACATGGGCCCCTGGAGGAAGCACAAGTACATGCAGTCCAAGTGGCTCGGCACGCCAGAGCGTGTCGCGGCCGCGG
CGGCGGCGCCGGTGGCGGTCTGGTCGCCGGAGAAGCAGACCAAGTTCAGGGCGTCCATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12793.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis