Browse Element(s) Details


Os.2135.1.S1_at

Description gb:AK073166.1
DB_XREF= gi:32983189
TID=Os.2135.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.14 (P0481E12.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023G10, full insert sequence.
FL= gb:AK073166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5440011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54340Os.40424.1.S1_at11/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54340Os.12793.1.S1_x_at10/111+31599195..31601223uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g54350Os.2128.1.S1_at11/111+31602090..31606233protein kinase, putative, expressed
LOC_Os01g54360OsAffx.23787.2.S1_x_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.1.S1_at3/111+31607700..31610060hypothetical protein
LOC_Os01g54360OsAffx.23787.2.S1_at2/111+31607700..31610060hypothetical protein
LOC_Os01g54370Os.2131.1.S1_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54370Os.2131.1.S1_s_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54380Os.2132.1.S1_s_at11/111+31613517..31614882pentatricopeptide, putative, expressed
LOC_Os01g54390Os.33221.1.S1_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54390Os.33221.2.S1_x_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed
LOC_Os01g54410OsAffx.11602.1.S1_at11/111+31629606..31629885hypothetical protein
LOC_Os01g54420Os.32564.1.S2_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54420Os.32564.1.S1_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54430Os.34474.2.S1_at2/111+31645119..31645936Plastocyanin-like domain containing protein
LOC_Os01g54440OsAffx.21624.1.S1_s_at11/111+31647011..31648696expressed protein
LOC_Os01g54450Os.42124.1.S1_x_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54450Os.42124.1.S1_at11/111+31651329..31651865nuclear protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2135.1.S1_at--1158--4551Chr01:31626202..31626226 (25 bp)
GCGCCTTCCGAGTGAGTGACCCAAA
LOC_Os01g54400
Os.2135.1.S1_at--977--6111Chr01:31626193..31626217 (25 bp)
GAGTGAGTGACCCAAAAGCTCCCGC
LOC_Os01g54400
Os.2135.1.S1_at--571--4151Chr01:31626163..31626187 (25 bp)
CGCGCGCCTCAACTATATCAAGTAA
LOC_Os01g54400
Os.2135.1.S1_at--780--8731Chr01:31626100..31626124 (25 bp)
TGTACCGTTTCTCTTCGCAGTTCTA
LOC_Os01g54400
Os.2135.1.S1_at--410--3751Chr01:31626090..31626114 (25 bp)
CTCTTCGCAGTTCTAGTTTTGTGGT
LOC_Os01g54400
Os.2135.1.S1_at--763--6931Chr01:31625977..31626001 (25 bp)
GTAGTGACCAGTGAGCGATTGTATA
LOC_Os01g54400
Os.2135.1.S1_at--223--4051Chr01:31625962..31625986 (25 bp)
CGATTGTATAATCCGAGCTCTAGAT
LOC_Os01g54400
Os.2135.1.S1_at--304--1591Chr01:31625947..31625971 (25 bp)
AGCTCTAGATTTCGGCTTCGGTTTC
LOC_Os01g54400
Os.2135.1.S1_at--428--10611Chr01:31625931..31625955 (25 bp)
TTCGGTTTCTTGATCGCTCGCTGGG
LOC_Os01g54400
Os.2135.1.S1_at--348--7631Chr01:31625908..31625932 (25 bp)
GGGACTCCGAAAGGATGGATCAATC
LOC_Os01g54400
Os.2135.1.S1_at--507--10771Chr01:31625865..31625889 (25 bp)
TTGAGCTTGGTGTTCTAACTCCCTT
LOC_Os01g54400
Target Sequence 
GCGCCTTCCGAGTGAGTGACCCAAAAGCTCCCGCCTTTGCGCGCGCCTCAACTATATCAAGTAATCGACGACGAGTACAA
CTACTGCTACTACCGCTCTCGCTGTACCGTTTCTCTTCGCAGTTCTAGTTTTGTGGTTGTTGTTCTTGATCTGCTGCTGC
TGCTGCTGTAATTTTTGCCCCCTTCTCGAAATGAAGAAGGGAGTTTCTTTTTTTTNCTTCTTTGGAGTAGTGACCAGTGA
GCGATTGTATAATCCGAGCTCTAGATTTCGGCTTCGGTTTCTTGATCGCTCGCTGGGGACTCCGAAAGGATGGATCAATC
GATTAATTAAGCTTAATTTTGAGCTTGGTGTTCTAACTCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis