Browse Element(s) Details


Os.32564.1.S2_at

Description gb:CA763922
DB_XREF= gi:27545721
DB_XREF=AF53-Rpf_01C_D17_T7.ab1
CLONE=C0000089
TID=Os.32564.1
CNT=7
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.32564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138A06, full insert sequence
FL= gb:AK103720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5442011/11dynamin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54370Os.2131.1.S1_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54370Os.2131.1.S1_s_at11/111+31610534..31613542Dihydroorotase, mitochondrial precursor, putative, expressed
LOC_Os01g54380Os.2132.1.S1_s_at11/111+31613517..31614882pentatricopeptide, putative, expressed
LOC_Os01g54390Os.33221.1.S1_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54390Os.33221.2.S1_x_at11/111+31615018..31619643S4 domain containing protein, expressed
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed
LOC_Os01g54410OsAffx.11602.1.S1_at11/111+31629606..31629885hypothetical protein
LOC_Os01g54420Os.32564.1.S2_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54420Os.32564.1.S1_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54430Os.34474.2.S1_at2/111+31645119..31645936Plastocyanin-like domain containing protein
LOC_Os01g54440OsAffx.21624.1.S1_s_at11/111+31647011..31648696expressed protein
LOC_Os01g54450Os.42124.1.S1_x_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54450Os.42124.1.S1_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54460NANA1+31654170..31655105hypothetical protein
LOC_Os01g54470OsAffx.11605.1.S1_at11/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.28229.2.S1_x_at2/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.51561.1.S1_x_at1/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54480Os.8233.1.S1_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54480Os.8233.1.S1_s_at11/111+31660081..31663929Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010020biological_processchloroplast fission
GO:0016192biological_processvesicle-mediated transport
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32564.1.S2_at--1123--4951Chr01:31636337..31636361 (25 bp)
GCATATGCTCAATATCTGCTCAGTA
LOC_Os01g54420
Os.32564.1.S2_at--665--8971Chr01:31636262..31636286 (25 bp)
TGAACTCTGGATTCTTGACCCCATG
LOC_Os01g54420
Os.32564.1.S2_at--344--8491Chr01:31635522..31635546 (25 bp)
TGGCTTCGAGCTGTTTGCTGTTAAT
LOC_Os01g54420
Os.32564.1.S2_at--132--10551Chr01:31635488..31635512 (25 bp)
TTCATGGACATGTTCGTGGCACCTG
LOC_Os01g54420
Os.32564.1.S2_at--716--6331Chr01:31635455..31635479 (25 bp)
GATGCTATCCAGAACGAGCGCCAGT
LOC_Os01g54420
Os.32564.1.S2_at--328--4171Chr01:31635437..31635461 (25 bp)
CGCCAGTCTCTGCTGAAACGTCAAA
LOC_Os01g54420
Os.32564.1.S2_at--876--10491Chr01:31635386..31635410 (25 bp)
TTCAAGAACATATCGCGGACCCTGT
LOC_Os01g54420
Os.32564.1.S2_at--1143--1191Chr01:31635356..31635380 (25 bp)
AGATTTTTCTGGTGCCTAGTCTACA
LOC_Os01g54420
Os.32564.1.S2_at--48--731Chr01:31635321..31635345 (25 bp)
ATGTATCCAGGAGCTTCAGTATATC
LOC_Os01g54420
Os.32564.1.S2_at--871--491Chr01:31635282..31635306 (25 bp)
ATCGGAGTTCCTGGTGAGTTTCTAC
LOC_Os01g54420
Os.32564.1.S2_at--917--6071Chr01:31635267..31635291 (25 bp)
GAGTTTCTACTGCTGTTTGGCATTT
LOC_Os01g54420
Target Sequence 
GCATATGCTCAATATCTGCTCAGTATNTCGCCAAAATGCGGGAAGTCCTGATTGAAAGGANTGTACCCTCTGCACTGAAC
TCTGGATTCTTGACCCCATGTCGTGAGCGGTTGTTTTTGGCACTTGGCTTCGAGCTGTTTGCTGTTAATGACGATAGATT
CATGGACATGTTCGTGGCACCTGGTGCTGTTGATGCTATCCAGAACGAGCGCCAGTCTCTGCTGAAACGTCAAAAGATTT
TGTTGTCCTGTTTGAATGAATTCAAGAACATATCGCGGACCCTGTAACAAAGATTTTTCTGGTGCCTAGTCTACAGGCAT
GTATGATGTATCCAGGAGCTTCAGTATATCCGTAAAGATGATACATCGGAGTTCCTGGTGAGTTTCTACTGCTGTTTGGC
ATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32564.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis