Browse Element(s) Details


Os.8233.1.S1_s_at

Description gb:AK071920.1
DB_XREF= gi:32981943
TID=Os.8233.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072M02, full insert sequence.
FL= gb:AK104674.1 gb:AK071920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5448011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54420Os.32564.1.S2_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54420Os.32564.1.S1_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54430Os.34474.2.S1_at2/111+31645119..31645936Plastocyanin-like domain containing protein
LOC_Os01g54440OsAffx.21624.1.S1_s_at11/111+31647011..31648696expressed protein
LOC_Os01g54450Os.42124.1.S1_x_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54450Os.42124.1.S1_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54460NANA1+31654170..31655105hypothetical protein
LOC_Os01g54470OsAffx.11605.1.S1_at11/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.28229.2.S1_x_at2/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.51561.1.S1_x_at1/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54480Os.8233.1.S1_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54480Os.8233.1.S1_s_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54490OsAffx.9441.1.S1_at11/111+31670212..31672370Phosphatidylethanolamine-binding protein
LOC_Os01g54510Os.12746.1.S1_at11/111+31676460..31679999MAC/Perforin domain containing protein, expressed
LOC_Os01g54520Os.16803.3.S1_x_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.1.S1_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_x_at10/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_at9/111+31686047..31688857lipoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8233.1.S1_s_at--1134--9591Chr01:31661163..31661186 (24 bp)
TCATTTGCTTTGATACTTCAAGAGA
LOC_Os01g54480
Os.8233.1.S1_s_at--2--6591Chr01:31661009..31661033 (25 bp)
GATTGAAGGATGTCTCCCTTTTTAT
LOC_Os01g54480
Os.8233.1.S1_s_at--578--4311Chr01:31660933..31660957 (25 bp)
CCTTTCAGAGCTCCTCCAAAGCATT
LOC_Os01g54480
Os.8233.1.S1_s_at--275--1551Chr01:31660914..31660938 (25 bp)
AGCATTATGCTTACGGATTGAGAGA
LOC_Os01g54480
Os.8233.1.S1_s_at--265--5511Chr01:31660685..31660709 (25 bp)
GAACAATGCTGGAGTGAAAATCCTG
LOC_Os01g54480
Os.8233.1.S1_s_at--1017--10011Chr01:31660659..31660683 (25 bp)
TAGCAGGCCTGACTTTAGAACGATC
LOC_Os01g54480
Os.8233.1.S1_s_at--44--4291Chr01:31660454..31660478 (25 bp)
CCTCTCAAATGCTTCCTGAGCTTTG
LOC_Os01g54480
Os.8233.1.S1_s_at--501--9071Chr01:31660445..31660469 (25 bp)
TGCTTCCTGAGCTTTGAGGGCATGT
LOC_Os01g54480
Os.8233.1.S1_s_at--654--3871Chr01:31660342..31660366 (25 bp)
CTGTTGTTGATTTCGTGTGGAGGAT
LOC_Os01g54480
Os.8233.1.S1_s_at--307--6831Chr01:31660268..31660292 (25 bp)
GTTTCACTGGAAATAGTTTTGCAAC
LOC_Os01g54480
Os.8233.1.S1_s_at--396--5151Chr01:31660248..31660272 (25 bp)
GCAACTTGTTGCTTCACTGTCGATC
LOC_Os01g54480
Target Sequence 
TCATTTGCTTTGATACTTCAAGAGATGATTGAAGGATGTCTCCCTTTTTATGACAAGAAAAATAATGAAATTGAGAAGGC
ACATAATTCTAAAGAAAGGCCACCTTTCAGAGCTCCTCCAAAGCATTATGCTTACGGATTGAGAGAGCTGATTGAACAAT
GCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAGAACGATCATTGAACAATTGTCTTATATCCAGAATGAAATATCT
CAGAGAAACCGTTGGAAGGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATCGAAATGAGGG
CAGCACCACTCGTTCATCACGTTCATCGAGATCCTATTTTTAACAGTCAGTTGGGCCTGTTGTTGATTTCGTGTGGAGGA
TTGTATGCATGATTGATAGAAAATCAACTCATTATATACCATAGATTTGTGTTTCACTGGAAATAGTTTTGCAACTTGTT
GCTTCACTGTCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8233.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis