Browse Element(s) Details


Os.16803.2.S1_x_at

Description gb:AK107255.1
DB_XREF= gi:32992464
TID=Os.16803.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.29 (P0481E12.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-G07, full insert sequence.
FL= gb:AK107255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5452010/11lipoprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54480Os.8233.1.S1_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54480Os.8233.1.S1_s_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54490OsAffx.9441.1.S1_at11/111+31670212..31672370Phosphatidylethanolamine-binding protein
LOC_Os01g54510Os.12746.1.S1_at11/111+31676460..31679999MAC/Perforin domain containing protein, expressed
LOC_Os01g54520Os.16803.3.S1_x_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.1.S1_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_x_at10/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_at9/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54530Os.2150.1.S1_at11/111+31689519..31692374expressed protein
LOC_Os01g54540Os.11152.1.S1_at11/111+31693883..3169626050S ribosomal protein L13, chloroplast precursor, putative, expressed
LOC_Os01g54550Os.2152.1.S1_at11/111+31697076..31699577heat shock factor, putative, expressed
LOC_Os01g54560Os.7240.2.S1_a_at11/111+31700290..31704392Trehalose synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16803.2.S1_x_at--415--1771Chr01:31687023..31687047 (25 bp)
ACCGTGGGTCGTTGTATCGTGTGTA
LOC_Os01g54520
Os.16803.2.S1_x_at--514--3311Chr01:31688404..31688428 (25 bp)
CACACGTTGATGGTAGCGGGCGACA
LOC_Os01g54520
Os.16803.2.S1_x_at--995--4591Chr01:31688562..31688586 (25 bp)
GCGACAGGTGGCTTGGGCTTCCTAA
LOC_Os01g54520
Os.16803.2.S1_x_at--686--8991Chr01:31688584..31688608 (25 bp)
TAAGGGCGGGCTCGACCCACAACTA
LOC_Os01g54520
Os.16803.2.S1_x_at--436--4651Chr01:31688673..31688697 (25 bp)
GCGTCGGCGCTGTGACCGTCAGATC
LOC_Os01g54520
Os.16803.2.S1_x_at--741--9391Chr01:31688708..31688732 (25 bp)
TCGTCGGGATTACTAGGGTTTTGAT
LOC_Os01g54520
Os.16803.2.S1_x_at--441--10111Chr01:31688764..31688788 (25 bp)
TATGGATGATATAAGCACCCGCGCA
LOC_Os01g54520
Os.16803.2.S1_x_at--458--9791Chr01:31688775..31688799 (25 bp)
TAAGCACCCGCGCATGAAAATTATC
LOC_Os01g54520
Os.16803.2.S1_x_at--927--2431Chr01:31688791..31688815 (25 bp)
AAAATTATCATAGACCACTTGGGAC
LOC_Os01g54520
Os.16803.2.S1_x_at--1146--9671Chr01:31688801..31688825 (25 bp)
TAGACCACTTGGGACGGACGGTCCG
LOC_Os01g54520
Os.16803.2.S1_x_at--671--5751NONE
GACGGTCCGTCTTTTACATGTGAGA
NONE
Target Sequence 
ACCGTGGGTCGTTGTATCGTGTGTACGGCNCCGTCGTAAACTCGTAACACCNACTGCTACCNNNNNNNNNNNNNACGTCT
TCTGGGCAAAAANNGNNNGNGNCNNNNNNNGNGNCACACGTTGATGGTAGCGGGCGACAGCAAGTGCAGCGGCTGCAGAC
GGCACCTCTGGCGAGGGGGTAGGTGGCGACGGGCTAGGTCCCGCAACGGCCGGCGGTGGGTGACAAGGGGATGGTGGGAG
GCTTGGGCTTGGCTCGTGGTGGATGGCAGTGGGCGACAGGTGGCTTGGGCTTCCTAAGGGCGGGCTCGACCCACAACTAC
TGACGGCGGGTGCCTCGGTGGCCGAATCCACCTCCGCCGATCTCGTGACGGCGCGATCCGTCGGCGTCGGCGCTGTGACC
GTCAGATCCGCGTCGCCGTCGTCGGGATTACTAGGGTTTTGATTTTTTTTAAGATATCTTTTTTTACTTTTATATATGGA
TGATATAAGCACCCGCGCATGAAAATTATCATAGACCACTTGGGACGGACGGTCCGTCTTTTACATGTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16803.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis