Browse Element(s) Details


Os.7240.2.S1_a_at

Description gb:AK067731.1
DB_XREF= gi:32977749
TID=Os.7240.2
CNT=24
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative trehalose-6-phosphate synthase homolog (P0481E12.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116P06, full insert sequence.
FL= gb:AK103775.1 gb:AK067731.1 gb:AK064990.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5456011/11Trehalose synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54510Os.12746.1.S1_at11/111+31676460..31679999MAC/Perforin domain containing protein, expressed
LOC_Os01g54520Os.16803.3.S1_x_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.1.S1_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_x_at10/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_at9/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54530Os.2150.1.S1_at11/111+31689519..31692374expressed protein
LOC_Os01g54540Os.11152.1.S1_at11/111+31693883..3169626050S ribosomal protein L13, chloroplast precursor, putative, expressed
LOC_Os01g54550Os.2152.1.S1_at11/111+31697076..31699577heat shock factor, putative, expressed
LOC_Os01g54560Os.7240.2.S1_a_at11/111+31700290..31704392Trehalose synthase, putative, expressed
LOC_Os01g54570NANA1+31718109..31719083hypothetical protein
LOC_Os01g54580Os.17293.2.S1_x_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.1.S1_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.2.S1_at9/111+31721741..31726917phosphate translocator, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0004805molecular_functiontrehalose-phosphatase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7240.2.S1_a_at--114--631Chr01:31700858..31700882 (25 bp)
ATGCTGAGCGCACTGGCAGATGCTA
LOC_Os01g54560
Os.7240.2.S1_a_at--183--3431Chr01:31700842..31700866 (25 bp)
CAGATGCTACTGAACCAGAACCTGA
LOC_Os01g54560
Os.7240.2.S1_a_at--1094--5431Chr01:31700825..31700849 (25 bp)
GAACCTGAGACTGATCTTACCGATG
LOC_Os01g54560
Os.7240.2.S1_a_at--550--6391Chr01:31700813..31700837 (25 bp)
GATCTTACCGATGAGTTTGATGAAC
LOC_Os01g54560
Os.7240.2.S1_a_at--999--6851Chr01:31700799..31700823 (25 bp)
GTTTGATGAACTGGCCGTGTCTGTC
LOC_Os01g54560
Os.7240.2.S1_a_at--601--7451Chr01:31700783..31700807 (25 bp)
GTGTCTGTCTCCTCAGTTGATATTG
LOC_Os01g54560
Os.7240.2.S1_a_at--492--8871Chr01:31700760..31700784 (25 bp)
TGATGATGAACAAACGCCCAGTGAT
LOC_Os01g54560
Os.7240.2.S1_a_at--908--2591Chr01:31700748..31700772 (25 bp)
AACGCCCAGTGATAAACTGATCGGA
LOC_Os01g54560
Os.7240.2.S1_a_at--842--7071Chr01:31700715..31700739 (25 bp)
GTCAAGGTTGCTTATATCTGCAGAT
LOC_Os01g54560
Os.7240.2.S1_a_at--1054--7111Chr01:31700689..31700713 (25 bp)
GTCATGATTAATTCAACCATCTCTA
LOC_Os01g54560
Os.7240.2.S1_a_at--1152--5271Chr01:31700651..31700675 (25 bp)
GAATGTGAAAGCTGGGTACTCAAAG
LOC_Os01g54560
Target Sequence 
ATGCTGAGCGCACTGGCAGATGCTACTGAACCAGAACCTGAGACTGATCTTACCGATGAGTTTGATGAACTGGCCGTGTC
TGTCTCCTCAGTTGATATTGATGATGAACAAACGCCCAGTGATAAACTGATCGGAGGATAGTAGTCAAGGTTGCTTATAT
CTGCAGATTGTCATGATTAATTCAACCATCTCTATACAATTTTTGATGAATGTGAAAGCTGGGTACTCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7240.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis