Browse Element(s) Details


Os.2150.1.S1_at

Description gb:CB632915
DB_XREF= gi:29627904
DB_XREF=OSIIEb11H10.r
CLONE=OSIIEb11H10
TID=Os.2150.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.2150 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.30 (P0481E12.30), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5453011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54490OsAffx.9441.1.S1_at11/111+31670212..31672370Phosphatidylethanolamine-binding protein
LOC_Os01g54510Os.12746.1.S1_at11/111+31676460..31679999MAC/Perforin domain containing protein, expressed
LOC_Os01g54520Os.16803.3.S1_x_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.1.S1_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_x_at10/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_at9/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54530Os.2150.1.S1_at11/111+31689519..31692374expressed protein
LOC_Os01g54540Os.11152.1.S1_at11/111+31693883..3169626050S ribosomal protein L13, chloroplast precursor, putative, expressed
LOC_Os01g54550Os.2152.1.S1_at11/111+31697076..31699577heat shock factor, putative, expressed
LOC_Os01g54560Os.7240.2.S1_a_at11/111+31700290..31704392Trehalose synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2150.1.S1_at--894--8931Chr01:31691824..31691848 (25 bp)
TGACGAACCACTTCATGTGTGCCTG
LOC_Os01g54530
Os.2150.1.S1_at--88--2831Chr01:31691857..31691881 (25 bp)
AAGTTGTTCGCTTCACATCTCGAGA
LOC_Os01g54530
Os.2150.1.S1_at--678--5911Chr01:31691878..31691902 (25 bp)
GAGACCAACTCAGTTTTCCGTACGT
LOC_Os01g54530
Os.2150.1.S1_at--630--10571Chr01:31691893..31691917 (25 bp)
TTCCGTACGTCTTGTGGCGCCTAAA
LOC_Os01g54530
Os.2150.1.S1_at--555--10331Chr01:31691937..31691961 (25 bp)
TTTACTGTATGCACTCGGAGGGATC
LOC_Os01g54530
Os.2150.1.S1_at--198--9831Chr01:31691992..31692016 (25 bp)
TAAAACCTCTTCTTACTCAGACCAA
LOC_Os01g54530
Os.2150.1.S1_at--810--6091Chr01:31692021..31692045 (25 bp)
GAGTCATCTGCCATGTGAAGCCTTT
LOC_Os01g54530
Os.2150.1.S1_at--465--10311Chr01:31692045..31692069 (25 bp)
TTTCTGGTTTATCTGCTGACAATCA
LOC_Os01g54530
Os.2150.1.S1_at--555--10411Chr01:31692083..31692107 (25 bp)
TTATATTGTTCTGATCTGCCACACC
LOC_Os01g54530
Os.2150.1.S1_at--457--11Chr01:31692146..31692170 (25 bp)
ATTCCTCAAAAATCGTCACGGTCTC
LOC_Os01g54530
Os.2150.1.S1_at--470--5691Chr01:31692181..31692205 (25 bp)
GACTTGCACCATTCACCAGATAGAT
LOC_Os01g54530
Target Sequence 
TGACGAACCACTTCATGTGTGCCTGGTTCAATGAAGTTGTTCGCTTCACATCTCGAGACCAACTCAGTTTTCCGTACGTC
TTGTGGCGCCTAAACATGCCAGGAATCAACATGTTTACTGTATGCACTCGGAGGGATCTTGTGAACNAGTTTGGGTCACA
CAAGAAAAGTAAAACCTCTTCTTACTCAGACCAATTCAGAGTCATCTGCCATGTGAAGCCTTTTTCTGGTTTATCTGCTG
ACAATCAACTAACCGTTGATTTATATTGTTCTGATCTGCCACACCCTTCGGTCCACAGTTTTGTTGTAAATTATTCATTC
ATTATTCCTCAAAAATCGTCACGGTCTCTATGTACAAGGACTTGCACCATTCACCAGATAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis