Browse Element(s) Details


Os.11152.1.S1_at

Description gb:AK104146.1
DB_XREF= gi:32989355
TID=Os.11152.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein L13 (P0481E12.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D01, full insert sequence.
FL= gb:AK072760.1 gb:AK099041.1 gb:AK119189.1 gb:AK104146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5454011/1150S ribosomal protein L13, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54490OsAffx.9441.1.S1_at11/111+31670212..31672370Phosphatidylethanolamine-binding protein
LOC_Os01g54510Os.12746.1.S1_at11/111+31676460..31679999MAC/Perforin domain containing protein, expressed
LOC_Os01g54520Os.16803.3.S1_x_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.1.S1_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_x_at10/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_at9/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54530Os.2150.1.S1_at11/111+31689519..31692374expressed protein
LOC_Os01g54540Os.11152.1.S1_at11/111+31693883..3169626050S ribosomal protein L13, chloroplast precursor, putative, expressed
LOC_Os01g54550Os.2152.1.S1_at11/111+31697076..31699577heat shock factor, putative, expressed
LOC_Os01g54560Os.7240.2.S1_a_at11/111+31700290..31704392Trehalose synthase, putative, expressed
LOC_Os01g54570NANA1+31718109..31719083hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11152.1.S1_at--330--1471Chr01:31695263..31695287 (25 bp)
AGAAGGTTGCTGTTTCTGGCAAAAA
LOC_Os01g54540
Os.11152.1.S1_at--477--2431Chr01:31695284..31695308 (25 bp)
AAAAGCGGTCACAGAAGCTCTACAG
LOC_Os01g54540
Os.11152.1.S1_at--191--5411Chr01:31695297..31695321 (25 bp)
GAAGCTCTACAGGAGGCACTCTGGA
LOC_Os01g54540
Os.11152.1.S1_at--864--3751Chr01:31695315..31695339 (25 bp)
CTCTGGACGGCCTGGTGGAATGAAA
LOC_Os01g54540
Os.11152.1.S1_at--161--2751Chr01:31695341..31695365 (25 bp)
AAGAAACTTTTGATCAGCTTCAGAA
LOC_Os01g54540
Os.11152.1.S1_at--586--1131Chr01:31695396..31695420 (25 bp)
AGTGCGTGGCATGCTTCCTAAGGGC
LOC_Os01g54540
Os.11152.1.S1_at--571--5051Chr01:31695939..31695963 (25 bp)
GCAGAACATCCCCATGAGGCTCAAA
LOC_Os01g54540
Os.11152.1.S1_at--335--6211Chr01:31695954..31695978 (25 bp)
GAGGCTCAAAAACCTGTTCCACTGC
LOC_Os01g54540
Os.11152.1.S1_at--349--3871Chr01:31695967..31695991 (25 bp)
CTGTTCCACTGCCTATCAAGGATAA
LOC_Os01g54540
Os.11152.1.S1_at--1067--2191Chr01:31696044..31696068 (25 bp)
ACAACAATCTCACGTAAATTCCTCC
LOC_Os01g54540
Os.11152.1.S1_at--424--9831Chr01:31696058..31696082 (25 bp)
TAAATTCCTCCCCTCGAGATTTTGT
LOC_Os01g54540
Target Sequence 
AGAAGGTTGCTGTTTCTGGCAAAAAGCGGTCACAGAAGCTCTACAGGAGGCACTCTGGACGGCCTGGTGGAATGAAAGAA
GAAACTTTTGATCAGCTTCAGAAAAGGATTCCGGAGAGAATTATTGAACATGCAGTGCGTGGCATGCTTCCTAAGGGCAG
ACTGGGAAGAAGACTGTTTACCCACCNTCAAGGTGTACAAGGGAGCAGAACATCCCCATGAGGCTCAAAAACCTGTTCCA
CTGCCTATCAAGGATAAAAGAATACAGAAGTCTGAGAAGTAGATAATTCCTGTGGAGACTAAGAAAGACACAACAATCTC
ACGTAAATTCCTCCCCTCGAGATTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis