Browse Element(s) Details


Os.2152.1.S1_at

Description gb:AY344491.1
DB_XREF= gi:33591111
TID=Os.2152.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2152 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) heat shock factor RHSF9 mRNA, complete cds.
PROD=heat shock factor RHSF9
FL= gb:AY344491.1 gb:AK109856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5455011/11heat shock factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54490OsAffx.9441.1.S1_at11/111+31670212..31672370Phosphatidylethanolamine-binding protein
LOC_Os01g54510Os.12746.1.S1_at11/111+31676460..31679999MAC/Perforin domain containing protein, expressed
LOC_Os01g54520Os.16803.3.S1_x_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.1.S1_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_x_at10/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_at9/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54530Os.2150.1.S1_at11/111+31689519..31692374expressed protein
LOC_Os01g54540Os.11152.1.S1_at11/111+31693883..3169626050S ribosomal protein L13, chloroplast precursor, putative, expressed
LOC_Os01g54550Os.2152.1.S1_at11/111+31697076..31699577heat shock factor, putative, expressed
LOC_Os01g54560Os.7240.2.S1_a_at11/111+31700290..31704392Trehalose synthase, putative, expressed
LOC_Os01g54570NANA1+31718109..31719083hypothetical protein
LOC_Os01g54580Os.17293.2.S1_x_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.1.S1_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.2.S1_at9/111+31721741..31726917phosphate translocator, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2152.1.S1_at--81--7751Chr01:31698881..31698905 (25 bp)
GGTGAAAGTGATCCCCGTGTTTCAT
LOC_Os01g54550
Os.2152.1.S1_at--335--2911Chr01:31698916..31698940 (25 bp)
AAGGATGCGTACTTCGTCAGCTGGT
LOC_Os01g54550
Os.2152.1.S1_at--449--5111Chr01:31698952..31698976 (25 bp)
GCACTCCTCTCGTGATGTAGCAGAG
LOC_Os01g54550
Os.2152.1.S1_at--6--1431Chr01:31698991..31699015 (25 bp)
AGAAAGTCCTCCTATTCCTCAAATG
LOC_Os01g54550
Os.2152.1.S1_at--648--91Chr01:31699004..31699028 (25 bp)
ATTCCTCAAATGCATTCTCGTGTAG
LOC_Os01g54550
Os.2152.1.S1_at--145--6051Chr01:31699098..31699122 (25 bp)
GAGATCAACCTGCTGAAGAGCCTCC
LOC_Os01g54550
Os.2152.1.S1_at--970--5131Chr01:31699139..31699163 (25 bp)
GCAAACGATGGCTTCTGGCAGCAGT
LOC_Os01g54550
Os.2152.1.S1_at--1141--8491Chr01:31699154..31699178 (25 bp)
TGGCAGCAGTTTCTTACCGAGCAGC
LOC_Os01g54550
Os.2152.1.S1_at--803--5511Chr01:31699307..31699331 (25 bp)
GAAAAACTTGGACTTCTCACCTCAA
LOC_Os01g54550
Os.2152.1.S1_at--405--3611Chr01:31699400..31699424 (25 bp)
CATTGGTGCCTTCCTCAGTGAGATA
LOC_Os01g54550
Os.2152.1.S1_at--1104--7431Chr01:31699448..31699472 (25 bp)
GTGTACCGTATTTTTTCCATCATGT
LOC_Os01g54550
Target Sequence 
GGTGAAAGTGATCCCCGTGTTTCATCACCTCCAACAAGGATGCGTACTTCGTCAGCTGGTGCAGGAGATTCGCACTCCTC
TCGTGATGTAGCAGAGTCNACCAGCTGTGCAGAAAGTCCTCCTATTCCTCAAATGCATTCTCGTGTAGATACACGAGCGA
AGGTTTCTGAAATAGATGTTAATTCAGAACCTGCTGTTACAGAAACTGGTCCATCAAGAGATCAACCTGCTGAAGAGCCT
CCTGCTGTCACACCTGGTGCAAACGATGGCTTCTGGCAGCAGTTTCTTACCGAGCAGCCTGGATCATCAGATGCACATCA
GGAGGCTCAATCAGAACGGCGAGATGGAGGAAACAAGGTGGATGAGATGAAATCAGGAGATCGACANCATCTTTGGTGGG
GCAAAAGGAACGTTGAGCAGATAACAGAAAAACTTGGACTTCTCACCTCAACGGAGAAAACCTGACATAATTTTGTTTTT
CTTTTTGTAGATGAAAAACTATTAATTNAGGAACGCTGACATTGGTGCCTTCCTCAGTGAGATATGTTGACTAACATCTA
TTTCGCAGTGTACCGTATTTTTTCCATCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis