Browse Element(s) Details


Os.16803.1.S1_at

Description gb:AK107265.1
DB_XREF= gi:32992474
TID=Os.16803.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.29 (P0481E12.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-H05, full insert sequence.
FL= gb:AK107290.1 gb:AK107265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5452011/11lipoprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54480Os.8233.1.S1_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54480Os.8233.1.S1_s_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54490OsAffx.9441.1.S1_at11/111+31670212..31672370Phosphatidylethanolamine-binding protein
LOC_Os01g54510Os.12746.1.S1_at11/111+31676460..31679999MAC/Perforin domain containing protein, expressed
LOC_Os01g54520Os.16803.3.S1_x_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.1.S1_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_x_at10/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_at9/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54530Os.2150.1.S1_at11/111+31689519..31692374expressed protein
LOC_Os01g54540Os.11152.1.S1_at11/111+31693883..3169626050S ribosomal protein L13, chloroplast precursor, putative, expressed
LOC_Os01g54550Os.2152.1.S1_at11/111+31697076..31699577heat shock factor, putative, expressed
LOC_Os01g54560Os.7240.2.S1_a_at11/111+31700290..31704392Trehalose synthase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16803.1.S1_at--1009--4651Chr01:31687107..31687131 (25 bp)
GCGTGACTTGACTTGAGCACTTTCA
LOC_Os01g54520
Os.16803.1.S1_at--939--1491Chr01:31687122..31687146 (25 bp)
AGCACTTTCATGTCTTGGATTTCAC
LOC_Os01g54520
Os.16803.1.S1_at--1018--7131Chr01:31687133..31687157 (25 bp)
GTCTTGGATTTCACACAGTTTTTCT
LOC_Os01g54520
Os.16803.1.S1_at--280--3312Chr01:31687146..31687170 (25 bp)
CACAGTTTTTCTTTTAGCCAGTTCA
LOC_Os01g54520
Os.16803.1.S1_at--654--331Chr01:31687219..31687243 (25 bp)
ATGAAGTAAGCTCAACTGTTAGGTT
LOC_Os01g54520
Os.16803.1.S1_at--211--6451Chr01:31687320..31687344 (25 bp)
GATCAATTTTGTCATGTGGGTCTTC
LOC_Os01g54520
Os.16803.1.S1_at--559--791Chr01:31687333..31687357 (25 bp)
ATGTGGGTCTTCTAAGGGTCCTCTA
LOC_Os01g54520
Os.16803.1.S1_at--1138--9771Chr01:31687345..31687369 (25 bp)
TAAGGGTCCTCTAATGGTTCGCACG
LOC_Os01g54520
Os.16803.1.S1_at--944--7891Chr01:31687360..31687384 (25 bp)
GGTTCGCACGCAAAACTAAGTCTAC
LOC_Os01g54520
Os.16803.1.S1_at--372--4132Chr01:31688070..31688094 (25 bp)
CGCATGTATAGTTGGGTCTCTTAAG
LOC_Os01g54520
Os.16803.1.S1_at--47--7711Chr01:31687492..31687516 (25 bp)
GGGTCTCTTAAGATGATCGTCTATT
LOC_Os01g54520
Target Sequence 
GCGTGACTTGACTTGAGCACTTTCATGTCTTGGATTTCACACAGTTTTTCTTTTAGCCAGTTCAACAAAAGCTTAATCAT
GAGTCTAAAAAAATGAAGTTGAGCTAGAAAAAATGAAGTAAGCTCAACTGTTAGGTTTGAGGGTTTATTTTGGAACCAGT
TCATGATTTAACAGATTAAACACGTTTACTTGTTTTTAATTATCTCAGTTCATGATCAATTTTGTCATGTGGGTCTTCTA
AGGGTCCTCTAATGGTTCGCACGCAAAACTAAGTCTACACTCAGAACCTATTTTTATATATAGACCTCTTAAGGTATTTT
TATAGACAGACCTCTTAAATAAGAGGGTCGCATGTATAGTTGGTAAGAGGGTCGCATGTATAGTTGGGTCTCTTAAGATG
ATCGTCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis