Browse Element(s) Details


Os.17293.1.S1_at

Description gb:AK103588.1
DB_XREF= gi:32988797
TID=Os.17293.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.37 (P0481E12.37), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133C05, full insert sequence.
FL= gb:AK103588.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5458011/11phosphate translocator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54550Os.2152.1.S1_at11/111+31697076..31699577heat shock factor, putative, expressed
LOC_Os01g54560Os.7240.2.S1_a_at11/111+31700290..31704392Trehalose synthase, putative, expressed
LOC_Os01g54570NANA1+31718109..31719083hypothetical protein
LOC_Os01g54580Os.17293.2.S1_x_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.1.S1_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.2.S1_at9/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54590Os.35653.1.S1_a_at11/111+31730672..31734109Ras-related protein RIC2, putative, expressed
LOC_Os01g54590Os.57489.1.S1_x_at1/111+31730672..31734109Ras-related protein RIC2, putative, expressed
LOC_Os01g54600Os.2160.2.S1_x_at10/111+31735980..31737674WRKY DNA binding domain containing protein, expressed
LOC_Os01g54610OsAffx.11608.1.S1_at11/111+31746785..31748376hypothetical protein
LOC_Os01g54620Os.18724.2.S1_x_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_a_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620OsAffx.16586.1.S1_x_at1/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17293.1.S1_at--468--5591Chr01:31726365..31726389 (25 bp)
GAAATTTAGTTACCTATGCCTCCTC
LOC_Os01g54580
Os.17293.1.S1_at--53--7771Chr01:31726393..31726417 (25 bp)
GGTGACTACCATCTATACATCTTGC
LOC_Os01g54580
Os.17293.1.S1_at--1022--7271Chr01:31726429..31726453 (25 bp)
GTGCCATCGTTTTTTATCTTTTCTG
LOC_Os01g54580
Os.17293.1.S1_at--136--10311Chr01:31726448..31726472 (25 bp)
TTTCTGTGCTTCCACGACTTAGGGA
LOC_Os01g54580
Os.17293.1.S1_at--703--5371Chr01:31726539..31726563 (25 bp)
GAAGACACATTTACACAAGCAGCAG
LOC_Os01g54580
Os.17293.1.S1_at--776--1511Chr01:31726556..31726580 (25 bp)
AGCAGCAGACAATCTAGTCGCCAAA
LOC_Os01g54580
Os.17293.1.S1_at--515--8831Chr01:31726653..31726677 (25 bp)
TGATAATACTTTTCCTCCACTTAGG
LOC_Os01g54580
Os.17293.1.S1_at--738--1351Chr01:31726710..31726734 (25 bp)
AGAGAGCTCAGTTTTGGCCAGTATT
LOC_Os01g54580
Os.17293.1.S1_at--536--6871Chr01:31726730..31726754 (25 bp)
GTATTGGCACGTGCGCGGAAGAATA
LOC_Os01g54580
Os.17293.1.S1_at--858--4991Chr01:31726755..31726779 (25 bp)
GCATGAGACACCTTTTTCTTCGATA
LOC_Os01g54580
Os.17293.1.S1_at--334--10011Chr01:31726879..31726903 (25 bp)
TAGAATTCTTTTCCCTTATTTTGAG
LOC_Os01g54580
Target Sequence 
GAAATTTAGTTACCTATGCCTCCTCACAGGTGACTACCATCTATACATCTTGCCTTGGTNTCANGTGCCATCGTTTTTTA
TCTTTTCTGTGCTTCCACGACTTAGGGAAGTTGTGTTGTTATTCATGAGGATGAGCATGAACATGAACATGACGCAAACA
ATATTATTGATTAAGAAGACACATTTACACAAGCAGCAGACAATCTAGTCGCCAAAGAAAGATTTTCATGTCAACAAAAA
AGGTGCAGATATCTGTCAAGAACTGTGCATAAATAGTATTGTTATATTTGATAATACTTTTCCTCCACTTAGGAATTTGC
TAATGCTTTCTTTAATTGGAAGAGTAGAGAGCTCAGTTTTGGCCAGTATTGGCACGTGCGCGGAAGAATAGCATGAGACA
CCTTTTTCTTCGATAGGAAAATACATTGTTTATATGTAGCAATNTTGTAATTTATGATTTTCTTTACTTTTAGCTAAATT
TACTGCATAGAAATGTGTAAATATTACATGATAATAGAATTCTTTTCCCTTATTTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis