Browse Element(s) Details


OsAffx.11608.1.S1_at

Description tigr:9629.m05326
TID=OsAffx.11608.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5461011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54580Os.17293.2.S1_x_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.1.S1_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.2.S1_at9/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54590Os.35653.1.S1_a_at11/111+31730672..31734109Ras-related protein RIC2, putative, expressed
LOC_Os01g54590Os.57489.1.S1_x_at1/111+31730672..31734109Ras-related protein RIC2, putative, expressed
LOC_Os01g54600Os.2160.2.S1_x_at10/111+31735980..31737674WRKY DNA binding domain containing protein, expressed
LOC_Os01g54610OsAffx.11608.1.S1_at11/111+31746785..31748376hypothetical protein
LOC_Os01g54620Os.18724.2.S1_x_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_a_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620OsAffx.16586.1.S1_x_at1/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54630OsAffx.23789.1.S1_at2/111+31758779..31760050Leucine Rich Repeat family protein
LOC_Os01g54640OsAffx.24460.1.S1_at5/111+31761117..31762939retrotransposon protein, putative, LINE subclass
LOC_Os01g54650Os.31312.5.S1_x_at3/111+31767220..31770475retrotransposon protein, putative, unclassified
LOC_Os01g54650Os.31312.2.S1_x_at3/111+31767220..31770475retrotransposon protein, putative, unclassified
LOC_Os01g54660OsAffx.22492.1.S1_x_at1/111+31771104..31777220retrotransposon protein, putative, unclassified
LOC_Os01g54660OsAffx.22492.1.S1_at1/111+31771104..31777220retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11608.1.S1_at--515--4671Chr01:31747837..31747861 (25 bp)
GCGGTCTACCAGCTTGTTTGGAGCA
LOC_Os01g54610
OsAffx.11608.1.S1_at--49--5951Chr01:31747857..31747881 (25 bp)
GAGCAGCGAACTAGCATTATCAGAA
LOC_Os01g54610
OsAffx.11608.1.S1_at--911--331Chr01:31747944..31747968 (25 bp)
ATACATGGCCCAGTTCGCTGGCAGA
LOC_Os01g54610
OsAffx.11608.1.S1_at--865--5071Chr01:31747981..31748005 (25 bp)
GCAGCCACCGTGATTTGGACATCAT
LOC_Os01g54610
OsAffx.11608.1.S1_at--567--9931Chr01:31748057..31748081 (25 bp)
TACGGACAGCGGATCGATTGCAAAT
LOC_Os01g54610
OsAffx.11608.1.S1_at--456--5551Chr01:31748131..31748155 (25 bp)
GAAACGGCGCAGCACTTGTTCAAGG
LOC_Os01g54610
OsAffx.11608.1.S1_at--994--1991Chr01:31748144..31748168 (25 bp)
ACTTGTTCAAGGATTGCCCGTTCAC
LOC_Os01g54610
OsAffx.11608.1.S1_at--219--4531Chr01:31748159..31748183 (25 bp)
GCCCGTTCACACGAGAGGTCTGGAA
LOC_Os01g54610
OsAffx.11608.1.S1_at--427--5031Chr01:31748207..31748231 (25 bp)
GCAGTCAATTATTTCTAGCGCACAA
LOC_Os01g54610
OsAffx.11608.1.S1_at--60--2891Chr01:31748296..31748320 (25 bp)
AAGGGATTGCGATCGCTACACGTGC
LOC_Os01g54610
OsAffx.11608.1.S1_at--1091--9851Chr01:31748312..31748336 (25 bp)
TACACGTGCTTCTCTGTTGGGAAGT
LOC_Os01g54610
Target Sequence 
GCGGTCTACCAGCTTGTTTGGAGCAGCGAACTAGCATTATCAGAAGGGACTGAGGACACGGTCATTTGGAGATGGATGAA
TACTGGCAAATACACAGCAAAATCGGCATACATGGCCCAGTTCGCTGGCAGAGAGGAATCAAGGGCAGCCACCGTGATTT
GGACATCATGGGCACTGTCCAAGTGCAAGAATTTTGCTTGGTTATTACTGCATAACAGATTACGGACAGCGGATCGATTG
CAAATCAGACAGTGGCCAAATTGTTACTTTTGTCAGCTTTGCTACAGAAACCTGGAAACGGCGCAGCACTTGTTCAAGGA
TTGCCCGTTCACACGAGAGGTCTGGAACAGAGTAGCTGCGAGACTGGAATGCAGTCAATTATTTCTAGCGCACAATCCAG
AGGAGAAGCTGATTGAATGGTGGGAAAAGAGGACATCCCAGCAGGACAAGAGACAAACAAAGGGATTGCGATCGCTACAC
GTGCTTCTCTGTTGGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis