Browse Element(s) Details


Os.35653.1.S1_a_at

Description gb:AY327044.1
DB_XREF= gi:32966064
TID=Os.35653.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35653 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) GTP-binding protein GTP1 mRNA, complete cds.
PROD=GTP-binding protein GTP1
FL= gb:AY327044.1 gb:AK060095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5459011/11Ras-related protein RIC2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54570NANA1+31718109..31719083hypothetical protein
LOC_Os01g54580Os.17293.2.S1_x_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.1.S1_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.2.S1_at9/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54590Os.35653.1.S1_a_at11/111+31730672..31734109Ras-related protein RIC2, putative, expressed
LOC_Os01g54590Os.57489.1.S1_x_at1/111+31730672..31734109Ras-related protein RIC2, putative, expressed
LOC_Os01g54600Os.2160.2.S1_x_at10/111+31735980..31737674WRKY DNA binding domain containing protein, expressed
LOC_Os01g54610OsAffx.11608.1.S1_at11/111+31746785..31748376hypothetical protein
LOC_Os01g54620Os.18724.2.S1_x_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_a_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620OsAffx.16586.1.S1_x_at1/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54630OsAffx.23789.1.S1_at2/111+31758779..31760050Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005802cellular_componentGolgi trans face
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35653.1.S1_a_at--831--7151Chr01:31733465..31733489 (25 bp)
GTCTATGATGTCACTCGGCGTGCTA
LOC_Os01g54590
Os.35653.1.S1_a_at--247--2011Chr01:31733477..31733501 (25 bp)
ACTCGGCGTGCTACTTTCGATAATG
LOC_Os01g54590
Os.35653.1.S1_a_at--545--10291Chr01:31733491..31733515 (25 bp)
TTTCGATAATGTGGCACGCTGGCTA
LOC_Os01g54590
Os.35653.1.S1_a_at--623--8891Chr01:31733523..31733547 (25 bp)
TGAGAGACCACACTGACCCTAGTAT
LOC_Os01g54590
Os.35653.1.S1_a_at--349--5991Chr01:31733651..31733675 (25 bp)
GAGACATCTGCATTAGACGCCACAA
LOC_Os01g54590
Os.35653.1.S1_a_at--397--5571Chr01:31733794..31733818 (25 bp)
GAAAGATGACGTGTCTGCGCTGAAG
LOC_Os01g54590
Os.35653.1.S1_a_at--275--4951Chr01:31733852..31733876 (25 bp)
GCATTTCTTGTTGATTTTTTCCACT
LOC_Os01g54590
Os.35653.1.S1_a_at--401--1051Chr01:31733877..31733901 (25 bp)
AGGTGTACGGCTGTATGTTGCTTCT
LOC_Os01g54590
Os.35653.1.S1_a_at--508--6771Chr01:31733949..31733973 (25 bp)
GTTAGATTGTTCCAACTTTCAGTTA
LOC_Os01g54590
Os.35653.1.S1_a_at--314--9531Chr01:31733990..31734014 (25 bp)
TCTTAACTCAAGACAGCTCCTTTCG
LOC_Os01g54590
Os.35653.1.S1_a_at--1144--1551Chr01:31734004..31734028 (25 bp)
AGCTCCTTTCGTCAGATTGGTTACT
LOC_Os01g54590
Target Sequence 
GTCTATGATGTCACTCGGCGTGCTACTTTCGATAATGTGGCACGCTGGCTAAAAGAGCTGAGAGACCACACTGACCCTAG
TATTGTTGTCATGCTAGTAGGCAACAAATCCGATCTCCGCCATCTGGTGGCTGTTTCAACTGAAGATGGAAAGGAATATG
CTGAGGCTGAGTCATTGTACTTCATGGAGACATCTGCATTAGACGCCACAAATGTAGAGAATGCTTTTGCAGAAGTTTTG
ACTCAGATATACCAAACTGTCAGCAAGAAGACGGTTGAGGCATCAGATGATGGATCAAATGCTCCAATCAAAGGAGAGAA
GATTAATGTGAAAGATGACGTGTCTGCGCTGAAGAGAATTGGCTGTTGCTCAAATTAGAGTAGAGATGCATTTCTTGTTG
ATTTTTTCCACTAGGTGTACGGCTGTATGTTGCTTCTATTGAAAGAGGTCCATTAATTTTCATTTTGTTGTGGTGATATT
GAGAGTTAGATTGTTCCAACTTTCAGTTATACCATTTCTTGAAAGTCTTAACTCAAGACAGCTCCTTTCGTCAGATTGGT
TACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35653.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis