Browse Element(s) Details


Os.18724.1.S1_a_at

Description gb:AK100475.1
DB_XREF= gi:32985684
TID=Os.18724.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.18724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cellulose synthase (P0046E05.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093O20, full insert sequence.
FL= gb:AK105078.1 gb:AK100475.1 gb:AK100374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5462011/11Cellulose synthase A catalytic subunit 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54580Os.17293.2.S1_x_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.1.S1_at11/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54580Os.17293.2.S1_at9/111+31721741..31726917phosphate translocator, putative, expressed
LOC_Os01g54590Os.35653.1.S1_a_at11/111+31730672..31734109Ras-related protein RIC2, putative, expressed
LOC_Os01g54590Os.57489.1.S1_x_at1/111+31730672..31734109Ras-related protein RIC2, putative, expressed
LOC_Os01g54600Os.2160.2.S1_x_at10/111+31735980..31737674WRKY DNA binding domain containing protein, expressed
LOC_Os01g54610OsAffx.11608.1.S1_at11/111+31746785..31748376hypothetical protein
LOC_Os01g54620Os.18724.2.S1_x_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_a_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620OsAffx.16586.1.S1_x_at1/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54630OsAffx.23789.1.S1_at2/111+31758779..31760050Leucine Rich Repeat family protein
LOC_Os01g54640OsAffx.24460.1.S1_at5/111+31761117..31762939retrotransposon protein, putative, LINE subclass
LOC_Os01g54650Os.31312.5.S1_x_at3/111+31767220..31770475retrotransposon protein, putative, unclassified
LOC_Os01g54650Os.31312.2.S1_x_at3/111+31767220..31770475retrotransposon protein, putative, unclassified
LOC_Os01g54660OsAffx.22492.1.S1_x_at1/111+31771104..31777220retrotransposon protein, putative, unclassified
LOC_Os01g54660OsAffx.22492.1.S1_at1/111+31771104..31777220retrotransposon protein, putative, unclassified
LOC_Os01g54670Os.32455.1.S1_at11/111+31780183..31784396expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006970biological_processresponse to osmotic stress
GO:0009414biological_processresponse to water deprivation
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009833biological_processprimary cell wall biosynthesis (sensu Magnoliophyta)
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18724.1.S1_a_at--132--4811Chr01:31754942..31754966 (25 bp)
GCTCTTCGGCAAGGTGTTCTTCGCC
LOC_Os01g54620
Os.18724.1.S1_a_at--102--5191Chr01:31754950..31754974 (25 bp)
GCAAGGTGTTCTTCGCCATGTGGGT
LOC_Os01g54620
Os.18724.1.S1_a_at--350--9331Chr01:31754962..31754986 (25 bp)
TCGCCATGTGGGTGATCATGCACTT
LOC_Os01g54620
Os.18724.1.S1_a_at--143--791Chr01:31754967..31754991 (25 bp)
ATGTGGGTGATCATGCACTTGTACC
LOC_Os01g54620
Os.18724.1.S1_a_at--1091--7751Chr01:31754972..31754996 (25 bp)
GGTGATCATGCACTTGTACCCCTTC
LOC_Os01g54620
Os.18724.1.S1_a_at--2--9611Chr01:31755007..31755031 (25 bp)
TCATGGGTCGCCAGAACCGGACGCC
LOC_Os01g54620
Os.18724.1.S1_a_at--1035--3531Chr01:31755035..31755059 (25 bp)
CATCGTCGTGCTCTGGTCTGTCCTG
LOC_Os01g54620
Os.18724.1.S1_a_at--973--7191Chr01:31755039..31755063 (25 bp)
GTCGTGCTCTGGTCTGTCCTGCTCG
LOC_Os01g54620
Os.18724.1.S1_a_at--907--7071Chr01:31755087..31755111 (25 bp)
GTCAAGATCGACCCGTTCATCGGCA
LOC_Os01g54620
Os.18724.1.S1_a_at--551--10531Chr01:31755102..31755126 (25 bp)
TTCATCGGCAGCTCCGAGACCACCA
LOC_Os01g54620
Os.18724.1.S1_a_at--715--4331Chr01:31755127..31755151 (25 bp)
CCACCAACAGCTGCGCCAACTTCGA
LOC_Os01g54620
Target Sequence 
GCTCTTCGGCAAGGTGTTCTTCGCCATGTGGGTGATCATGCACTTGTACCCCTTCCTCAAGGGTCTCATGGGTCGCCAGA
ACCGGACGCCCACCATCGTCGTGCTCTGGTCTGTCCTGCTCGCCTCCGTCTTCTCCCTCCTCTGGGTCAAGATCGACCCG
TTCATCGGCAGCTCCGAGACCACCACCACCAACAGCTGCGCCAACTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18724.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis