Browse Element(s) Details


OsAffx.23789.1.S1_at

Description gb:NM_191234.1
DB_XREF= gi:34909551
GEN=P0046E05.6
TID=OsAffx.23789.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0046E05.6 (P0046E05.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g546302/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54590Os.35653.1.S1_a_at11/111+31730672..31734109Ras-related protein RIC2, putative, expressed
LOC_Os01g54590Os.57489.1.S1_x_at1/111+31730672..31734109Ras-related protein RIC2, putative, expressed
LOC_Os01g54600Os.2160.2.S1_x_at10/111+31735980..31737674WRKY DNA binding domain containing protein, expressed
LOC_Os01g54610OsAffx.11608.1.S1_at11/111+31746785..31748376hypothetical protein
LOC_Os01g54620Os.18724.2.S1_x_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620Os.18724.1.S1_a_at11/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54620OsAffx.16586.1.S1_x_at1/111+31749794..31755518Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os01g54630OsAffx.23789.1.S1_at2/111+31758779..31760050Leucine Rich Repeat family protein
LOC_Os01g54640OsAffx.24460.1.S1_at5/111+31761117..31762939retrotransposon protein, putative, LINE subclass
LOC_Os01g54650Os.31312.5.S1_x_at3/111+31767220..31770475retrotransposon protein, putative, unclassified
LOC_Os01g54650Os.31312.2.S1_x_at3/111+31767220..31770475retrotransposon protein, putative, unclassified
LOC_Os01g54660OsAffx.22492.1.S1_x_at1/111+31771104..31777220retrotransposon protein, putative, unclassified
LOC_Os01g54660OsAffx.22492.1.S1_at1/111+31771104..31777220retrotransposon protein, putative, unclassified
LOC_Os01g54670Os.32455.1.S1_at11/111+31780183..31784396expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23789.1.S1_at--676--4071Chr01:31758974..31758998 (25 bp)
CGACAAGTACGGGTTCCCGGTGATG
LOC_Os01g54630
OsAffx.23789.1.S1_at--522--9911Chr01:31758786..31758810 (25 bp)
TACTCGTCTGCCTCTGCAAGGTGTG
LOC_Os01g54630
OsAffx.23789.1.S1_at--775--9911Chr01:31757616..31757640 (25 bp)
TACTGCATGTTCGAGCACCAGTTGA
NONE
OsAffx.23789.1.S1_at--89--5091Chr01:31757602..31757626 (25 bp)
GCACCAGTTGATCCGGCTGTGCAAA
NONE
OsAffx.23789.1.S1_at--996--1271Chr01:31757569..31757593 (25 bp)
AGATCAGGCCAGTATTTCCTTCCTT
NONE
OsAffx.23789.1.S1_at--808--4391Chr01:31757374..31757398 (25 bp)
GCCAACCGCGCGCAATTCGGATGAG
NONE
OsAffx.23789.1.S1_at--669--7991Chr01:31757356..31757380 (25 bp)
GGATGAGCCGCACGGCTATCATGTA
NONE
OsAffx.23789.1.S1_at--1042--4451Chr01:31757319..31757343 (25 bp)
GCCTCAGCGCAACCATCCAAAAAGA
NONE
OsAffx.23789.1.S1_at--498--8171Chr01:31757293..31757317 (25 bp)
GGAACAGCTACGAAGCTACAGCATT
NONE
OsAffx.23789.1.S1_at--974--1091Chr01:31756704..31756728 (25 bp)
AGTGGACGACCACGATACATTGGTT
NONE
OsAffx.23789.1.S1_at--623--1271Chr01:31756669..31756693 (25 bp)
AGATACAATCGAGTACTGTGACGTA
NONE
Target Sequence 
CGACAAGTACGGGTTCCCGGTGATGGCGCCGCCGGCGACGGCGACGGCGCGGTCGGAGCGGAGCGCGGACTACGACGACG
GCGCAAAGGACGGGGACGCGGACGAGGGCGCCGACGCGCGGGGCGGGCCCAGCGCGGCGGTGCTCGGGGTGGCCATCGGG
CTGTCCTGCCTGGCGTTCGCCGTCATCCTACTCGTCTGCCTCTGCAAGGTGTGCCGNNNNTACTGCATGTTCGAGCACCA
GTTGATCCGGCTGTGCAAAGAGATTAGAGATCAGGCCAGTATTTCCTTCCTTGCATTTGATTGTGGCACAAACACACAGG
GGCCTTCAACCTCACGTTGCCAACCGCGCGCAATTCGGATGAGCCGCACGGCTATCATGTACCCCTCGGTCCCGCCTCAG
CGCAACCATCCAAAAAGACGGAACAGCTACGAAGCTACAGCATTGTACAAGTCACAACAGACGAGTGGACGACCACGATA
CATTGGTTATAGTAGTAGAGATACAATCGAGTACTGTGACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis