Browse Element(s) Details

Os.31312.5.S1_x_at

Description

gb:NM_192483.1
DB_XREF= gi:34912049
GEN=P0445H04.25
TID=Os.31312.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0024F24.28 (OSJNBa0024F24.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0445H04.25 (P0445H04.25), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g02360	6/11	retrotransposon protein, putative, unclassified
LOC_Os01g47160	6/11	retrotransposon protein, putative, unclassified
LOC_Os04g44970	6/11	retrotransposon protein, putative, unclassified
LOC_Os09g40030	5/11	retrotransposon protein, putative, unclassified
LOC_Os01g74220	5/11	retrotransposon protein, putative, unclassified
LOC_Os11g13610	5/11	retrotransposon protein, putative, unclassified
LOC_Os09g39890	5/11	retrotransposon protein, putative, unclassified
LOC_Os04g09830	5/11	retrotransposon protein, putative, unclassified, expressed
LOC_Os09g40060	5/11	retrotransposon protein, putative, unclassified
LOC_Os03g53820	5/11	retrotransposon protein, putative, unclassified
LOC_Os05g24470	5/11	retrotransposon protein, putative, unclassified
LOC_Os04g10270	5/11	retrotransposon protein, putative, unclassified
LOC_Os01g64610	5/11	retrotransposon protein, putative, unclassified
LOC_Os11g20300	5/11	retrotransposon protein, putative, unclassified
LOC_Os01g74690	5/11	retrotransposon protein, putative, unclassified
LOC_Os06g48100	5/11	retrotransposon protein, putative, unclassified
LOC_Os06g42200	5/11	retrotransposon protein, putative, unclassified
LOC_Os11g09250	5/11	retrotransposon protein, putative, unclassified
LOC_Os08g14560	4/11	retrotransposon protein, putative, unclassified
LOC_Os07g15630	4/11	retrotransposon protein, putative, unclassified
LOC_Os06g49960	4/11	retrotransposon protein, putative, unclassified
LOC_Os04g12030	4/11	retrotransposon protein, putative, unclassified
LOC_Os02g20260	4/11	retrotransposon protein, putative, unclassified
LOC_Os11g09410	4/11	retrotransposon protein, putative, unclassified
LOC_Os09g37160	4/11	retrotransposon protein, putative, unclassified
LOC_Os01g37080	4/11	retrotransposon protein, putative, unclassified
LOC_Os12g03000	4/11	retrotransposon protein, putative, unclassified
LOC_Os04g59280	4/11	retrotransposon protein, putative, unclassified
LOC_Os10g36140	4/11	retrotransposon protein, putative, unclassified
LOC_Os09g08630	4/11	retrotransposon protein, putative, unclassified
LOC_Os02g56660	4/11	retrotransposon protein, putative, unclassified
LOC_Os09g04080	4/11	retrotransposon protein, putative, unclassified
LOC_Os08g33560	4/11	retrotransposon protein, putative, unclassified
LOC_Os12g26250	4/11	retrotransposon protein, putative, unclassified
LOC_Os06g05030	4/11	retrotransposon protein, putative, unclassified
LOC_Os07g41770	4/11	retrotransposon protein, putative, unclassified
LOC_Os06g14150	4/11	retrotransposon protein, putative, unclassified
LOC_Os02g44060	4/11	retrotransposon protein, putative, unclassified
LOC_Os02g51530	4/11	retrotransposon protein, putative, unclassified
LOC_Os04g55540	4/11	retrotransposon protein, putative, unclassified
LOC_Os08g36940	4/11	retrotransposon protein, putative, unclassified
LOC_Os06g28090	4/11	retrotransposon protein, putative, unclassified
LOC_Os04g02700	4/11	retrotransposon protein, putative, unclassified
LOC_Os02g01400	3/11	retrotransposon protein, putative, unclassified
LOC_Os12g28400	3/11	retrotransposon protein, putative, unclassified
LOC_Os04g17430	3/11	retrotransposon protein, putative, unclassified
LOC_Os01g54650	3/11	retrotransposon protein, putative, unclassified
LOC_Os11g47420	3/11	retrotransposon protein, putative, unclassified
LOC_Os06g17810	3/11	retrotransposon protein, putative, unclassified
LOC_Os02g53630	3/11	retrotransposon protein, putative, unclassified
LOC_Os03g21190	3/11	retrotransposon protein, putative, unclassified
LOC_Os10g16670	3/11	retrotransposon protein, putative, unclassified
LOC_Os11g03100	3/11	retrotransposon protein, putative, unclassified
LOC_Os09g40085	2/11	retrotransposon protein, putative, unclassified
LOC_Os11g31910	2/11	retrotransposon protein, putative, unclassified
LOC_Os06g05840	2/11	retrotransposon protein, putative, unclassified
LOC_Os02g44390	2/11	retrotransposon protein, putative, unclassified
LOC_Os01g12350	2/11	retrotransposon protein, putative, unclassified
LOC_Os09g40018	2/11	retrotransposon protein, putative, unclassified
LOC_Os09g40010	2/11	retrotransposon protein, putative, unclassified
LOC_Os09g03700	2/11	retrotransposon protein, putative, unclassified, expressed
LOC_Os04g39390	2/11	retrotransposon protein, putative, unclassified
LOC_Os06g06840	2/11	transposon protein, putative, unclassified
LOC_Os07g20200	1/11	retrotransposon protein, putative, unclassified
LOC_Os04g53880	1/11	retrotransposon protein, putative, unclassified
LOC_Os07g30350	1/11	retrotransposon protein, putative, unclassified

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g02320	Os.17312.2.S1_x_at	11/11	3	+	778378..787641	protein kinase, putative, expressed
LOC_Os03g02320	Os.46609.1.S1_x_at	10/11	3	+	778378..787641	protein kinase, putative, expressed
LOC_Os03g02330	Os.30518.1.S1_at	11/11	3	+	791171..793070	ATPase, AAA family protein, expressed
LOC_Os03g02330	Os.2528.1.S1_x_at	1/11	3	+	791171..793070	ATPase, AAA family protein, expressed
LOC_Os03g02340	NA	NA	3	+	797203..799457	hypothetical protein
LOC_Os03g02350	NA	NA	3	+	800595..806750	transposon protein, putative, unclassified
LOC_Os03g02360	Os.31312.5.S1_x_at	6/11	3	+	807383..810644	retrotransposon protein, putative, unclassified
LOC_Os03g02360	Os.31312.2.S1_x_at	4/11	3	+	807383..810644	retrotransposon protein, putative, unclassified
LOC_Os03g02370	Os.41695.15.S1_s_at	9/11	3	+	811790..815154	calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370	Os.41695.5.S1_x_at	8/11	3	+	811790..815154	calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370	Os.41695.2.S1_x_at	8/11	3	+	811790..815154	calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370	Os.41695.3.S1_x_at	8/11	3	+	811790..815154	calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370	OsAffx.9045.1.S1_at	1/11	3	+	811790..815154	calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370	Os.41695.4.S1_x_at	1/11	3	+	811790..815154	calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370	OsAffx.9045.1.S1_x_at	1/11	3	+	811790..815154	calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02380	Os.7371.1.S1_s_at	11/11	3	+	820731..824787	expressed protein
LOC_Os03g02390	Os.7624.1.S1_at	11/11	3	+	826399..827486	Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g02400	Os.31089.1.S1_at	11/11	3	+	829110..830434	Plastocyanin-like domain containing protein, expressed
LOC_Os03g02410	Os.19363.1.S1_a_at	11/11	3	+	830606..835526	GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02410	Os.7654.1.S1_at	1/11	3	+	830606..835526	GHMP kinases putative ATP-binding protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.31312.5.S1_x_at--691--449	2	Chr01:27285650..27285674 (25 bp)	GCCGAGGAGGTCGAAGCCCTTCGCT	LOC_Os01g47160
Os.31312.5.S1_x_at--1156--1003	7	Chr11:27966868..27966892 (25 bp)	TAGATCGCGCCGGTCGGCAAGTGGG	LOC_Os11g47420
Os.31312.5.S1_x_at--738--397	58	Chr12:1118519..1118543 (25 bp)	CGGTCGGCAAGTGGGCCTCTGGAGA	LOC_Os12g03000
Os.31312.5.S1_x_at--1099--943	2	Chr04:1019788..1019812 (25 bp)	TCTGGAGAGGGCAGACCGTAAAGTA	LOC_Os04g02700
Os.31312.5.S1_x_at--1132--131	2	Chr04:1019793..1019817 (25 bp)	AGAGGGCAGACCGTAAAGTACGCCG	LOC_Os04g02700
Os.31312.5.S1_x_at--521--823	2	Chr01:27285759..27285783 (25 bp)	GGCAGACCGTAAAGTACGCCGCCAA	LOC_Os01g47160
Os.31312.5.S1_x_at--764--537	58	Chr12:1118639..1119083 (25 bp)	GAAGACAATTAAGTCATCCTTGAGG	NONE
Os.31312.5.S1_x_at--148--141	2	Chr07:11658691..11658710 (20 bp)	AGACAATTAAGTCATCCTTGAGGGA	LOC_Os07g20200
Os.31312.5.S1_x_at--756--107	54	Chr12:1118712..1118736 (25 bp)	AGGGACCCCAATTTCTCTCCATGGA	LOC_Os12g03000
Os.31312.5.S1_x_at--992--319	49	Chr12:1118873..1118897 (25 bp)	CAATGCCGGTGGTGCAGACGACAGT	LOC_Os12g03000
Os.31312.5.S1_x_at--788--449	53	Chr12:1118877..1118901 (25 bp)	GCCGGTGGTGCAGACGACAGTGACG	LOC_Os12g03000

Target Sequence

GCCGAGGAGGTCGAAGCCCTTCGCTTGGCAGGCGAGGTAGGGCCCGGCATGCTTTGGGACGCCGTCTCCCGCCTAGATCG
CGCCGGTCGGCAAGTGGGCCTCTGGAGAGGGCAGACCGTAAAGTACGCCGCCAACCAGGGAGATGGCCGGGGCTCTCCAA
CGGCTCCCGAGGAGCTCGAGAAGACAATTAAGTCATCCTTGAGGGACCTCGCCCAAGGAGCGGTGGAGCTCGTCCTGGCG
AGTTACCAGGCCAGGGACCCCAATTTCTCTCCATGGATGGCGCTGGATGAGTTCCCTCCTGGGACCGAGGACCGCGCGCG
CGCGCAGGTCCGGGATGCCGCCGACCATATCGTCGACAGCTTCGAGGGCTCGGCCCCTCGGCTCGCGTTCGCCCCCAACT
CCGACGAGGAGGGCAATGCCGGTGGTGCAGACGACAGTGACG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis