Browse Element(s) Details


Os.2528.1.S1_x_at

Description gb:BI804624
DB_XREF= gi:16577328
DB_XREF=H141H08
CLONE=H141H08
TID=Os.2528.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2528 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0018B10.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g375007/11ATPase, AAA family protein, expressed
LOC_Os03g023301/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37480Os.2524.2.S1_x_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37480Os.2524.1.S1_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37490OsAffx.18556.1.S1_at11/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37490OsAffx.18556.2.S1_x_at10/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37500Os.2528.1.S1_x_at7/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37500Os.2528.1.S1_at4/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37510Os.12847.1.S1_at11/1110+19757663..19758370expressed protein
LOC_Os10g37520Os.2506.1.S1_at11/1110+19762051..19765321Major Facilitator Superfamily protein, expressed
LOC_Os10g37530Os.46850.1.S1_at11/1110+19765911..19766854Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os10g37540Os.46846.1.S1_at11/1110+19768702..19770368F-box domain containing protein, expressed
LOC_Os10g37560Os.41695.15.S1_s_at11/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.2.S1_x_at10/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.3.S1_x_at9/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.5.S1_x_at9/1110+19774762..19777504expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2528.1.S1_x_at--1015--5091Chr10:19752686..19752710 (25 bp)
GCACGGTCATCAACGCGCTGCAGCA
LOC_Os10g37500
Os.2528.1.S1_x_at--269--7131Chr10:19752681..19752705 (25 bp)
GTCATCAACGCGCTGCAGCACGTGG
LOC_Os10g37500
Os.2528.1.S1_x_at--583--4211Chr10:19752600..19752624 (25 bp)
CCGCCCAGGCTGACCGCGAGATGGT
LOC_Os10g37500
Os.2528.1.S1_x_at--1005--4211Chr10:19752587..19752611 (25 bp)
CCGCGAGATGGTCCGGTCACCTCGA
LOC_Os10g37500
Os.2528.1.S1_x_at--340--1832Chr10:19752491..19752515 (25 bp)
ACGCGCCGATGAGGGAGTTCAAGAA
LOC_Os10g37500
Os.2528.1.S1_x_at--505--6751Chr10:19752475..19752499 (25 bp)
GTTCAAGAAGCTCTACGGGCTGATC
LOC_Os10g37500
Os.2528.1.S1_x_at--59--4751Chr10:19752457..19752481 (25 bp)
GCTGATCAAGATCAGGAGCCGCAAG
LOC_Os10g37500
Os.2528.1.S1_x_at--248--4551Chr10:19752371..19752395 (25 bp)
GCGCCGATAAGGACCGGTGATAAAT
NONE
Os.2528.1.S1_x_at--840--2411Chr10:19752340..19752364 (25 bp)
AAAACATTTTGCACTTGCCCTCTTC
NONE
Os.2528.1.S1_x_at--894--3651Chr10:19752250..19752274 (25 bp)
CTTCTTGTGTATCTTCGCACTTGAT
NONE
Os.2528.1.S1_x_at--713--3611Chr10:19752247..19752271 (25 bp)
CTTGTGTATCTTCGCACTTGATCAC
NONE
Target Sequence 
GCACGGTCATCAACGCGCTGCAGCACGTGGCGCCGGCCCCGGCGCCGCCGCAGCAGCAGCCCCGGGCGAGCTCCGCGTCG
CGGCCGCCGCCCAGGCTGACCGCGAGATGGTCCGGTCACCTCGACGAGGCAAGCGCGGCGGACGCAAGCGCGGCCAACCA
ATCGCCGGGCGGCGGCGGCGGGGGATTCGGGAAGGACGCGCCGATGAGGGAGTTCAAGAAGCTCTACGGGCTGATCAAGA
TCAGGAGCCGCAAGGACGGCGGCGTCGTTCCCGTCGACGACACGGCGTCGGCGAACGGCCGGGGCAGTGACGTCAGCGCC
GATAAGGACCGGTGATAAATTAAAGAAAAACATTTTGCACTTGCCCTCTTCNNNNNNNNNNNNNNNNNNTTCTTCTTCTT
CTTCTTCTTCTTNNNNCTTCTTGTGTATCTTCGCACTTGATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2528.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis